Hb_011980_030

Information

Type -
Description -
Location Contig11980: 30055-30513
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_002525845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011980_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000832_260 0.0017295471 - - Protein gar2, putative [Ricinus communis]
3 Hb_109050_010 0.0017295471 - - -
4 Hb_060300_010 0.0024426908 - - hypothetical protein F383_16817 [Gossypium arboreum]
5 Hb_001988_040 0.0030339039 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
6 Hb_001821_040 0.0046468975 - - -
7 Hb_000698_050 0.005834376 - - -
8 Hb_098361_010 0.0065675588 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
9 Hb_002189_020 0.0068470211 - - conserved hypothetical protein [Ricinus communis]
10 Hb_060997_010 0.0068470211 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
11 Hb_000581_070 0.0070263419 - - -
12 Hb_007668_030 0.0075588681 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
13 Hb_027970_010 0.0080356708 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_186580_020 0.0106131144 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
15 Hb_007120_110 0.0108139239 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_001461_030 0.0129068164 - - -
17 Hb_024415_010 0.0134204794 - - -
18 Hb_085603_010 0.0142747479 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
19 Hb_004048_040 0.0146387838 - - -
20 Hb_000573_080 0.0149846528 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]

Gene co-expression network

sample Hb_011980_030 Hb_011980_030 Hb_000832_260 Hb_000832_260 Hb_011980_030--Hb_000832_260 Hb_109050_010 Hb_109050_010 Hb_011980_030--Hb_109050_010 Hb_060300_010 Hb_060300_010 Hb_011980_030--Hb_060300_010 Hb_001988_040 Hb_001988_040 Hb_011980_030--Hb_001988_040 Hb_001821_040 Hb_001821_040 Hb_011980_030--Hb_001821_040 Hb_000698_050 Hb_000698_050 Hb_011980_030--Hb_000698_050 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050 Hb_000832_260--Hb_060300_010 Hb_000832_260--Hb_001988_040 Hb_000832_260--Hb_109050_010 Hb_000832_260--Hb_001821_040 Hb_000832_260--Hb_000698_050 Hb_000832_260--Hb_060300_010 Hb_000832_260--Hb_001988_040 Hb_060300_010--Hb_001988_040 Hb_098361_010 Hb_098361_010 Hb_060300_010--Hb_098361_010 Hb_060300_010--Hb_109050_010 Hb_000581_070 Hb_000581_070 Hb_060300_010--Hb_000581_070 Hb_001988_040--Hb_098361_010 Hb_001988_040--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_001988_040--Hb_007668_030 Hb_001821_040--Hb_000698_050 Hb_002189_020 Hb_002189_020 Hb_001821_040--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_001821_040--Hb_060997_010 Hb_001821_040--Hb_109050_010 Hb_027970_010 Hb_027970_010 Hb_001821_040--Hb_027970_010 Hb_000698_050--Hb_002189_020 Hb_000698_050--Hb_060997_010 Hb_000698_050--Hb_027970_010 Hb_000698_050--Hb_109050_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0510958 0.223041

CAGE analysis