Hb_085603_010

Information

Type -
Description -
Location Contig85603: 2301-3521
Sequence    

Annotation

kegg
ID fve:101296995
description uncharacterized protein LOC101296995
nr
ID XP_004287237.1
description PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID D7T4Z8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085603_010 0.0 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
2 Hb_062634_010 0.001625384 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
3 Hb_186580_020 0.0036620559 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
4 Hb_001227_050 0.0061700563 - - -
5 Hb_020367_060 0.0061700563 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
6 Hb_027970_010 0.0062396245 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_002189_020 0.0074282832 - - conserved hypothetical protein [Ricinus communis]
8 Hb_060997_010 0.0074282832 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
9 Hb_000698_050 0.0084409117 - - -
10 Hb_001821_040 0.0096283418 - - -
11 Hb_029344_010 0.011553235 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_000832_260 0.0125454403 - - Protein gar2, putative [Ricinus communis]
13 Hb_109050_010 0.0125454403 - - -
14 Hb_011980_030 0.0142747479 - - conserved hypothetical protein [Ricinus communis]
15 Hb_146757_010 0.0152430195 - - -
16 Hb_060300_010 0.0167169844 - - hypothetical protein F383_16817 [Gossypium arboreum]
17 Hb_001988_040 0.017308067 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
18 Hb_000295_070 0.0178361543 - - polyprotein [Oryza australiensis]
19 Hb_098361_010 0.0208407728 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
20 Hb_000581_070 0.0212994112 - - -

Gene co-expression network

sample Hb_085603_010 Hb_085603_010 Hb_062634_010 Hb_062634_010 Hb_085603_010--Hb_062634_010 Hb_186580_020 Hb_186580_020 Hb_085603_010--Hb_186580_020 Hb_001227_050 Hb_001227_050 Hb_085603_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_085603_010--Hb_020367_060 Hb_027970_010 Hb_027970_010 Hb_085603_010--Hb_027970_010 Hb_002189_020 Hb_002189_020 Hb_085603_010--Hb_002189_020 Hb_062634_010--Hb_001227_050 Hb_062634_010--Hb_020367_060 Hb_062634_010--Hb_186580_020 Hb_062634_010--Hb_027970_010 Hb_062634_010--Hb_002189_020 Hb_186580_020--Hb_027970_010 Hb_186580_020--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_186580_020--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_186580_020--Hb_000698_050 Hb_001227_050--Hb_020367_060 Hb_029344_010 Hb_029344_010 Hb_001227_050--Hb_029344_010 Hb_146757_010 Hb_146757_010 Hb_001227_050--Hb_146757_010 Hb_001227_050--Hb_186580_020 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_029344_010 Hb_001227_050--Hb_146757_010 Hb_001227_050--Hb_186580_020 Hb_027970_010--Hb_002189_020 Hb_027970_010--Hb_060997_010 Hb_027970_010--Hb_000698_050 Hb_001821_040 Hb_001821_040 Hb_027970_010--Hb_001821_040 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_000832_260 Hb_000832_260 Hb_002189_020--Hb_000832_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0732668 0.293703

CAGE analysis