Hb_029344_010

Information

Type -
Description -
Location Contig29344: 10964-17846
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029344_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_146757_010 0.0036902425 - - -
3 Hb_001227_050 0.0053834534 - - -
4 Hb_020367_060 0.0053834534 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
5 Hb_000295_070 0.0062838279 - - polyprotein [Oryza australiensis]
6 Hb_062634_010 0.0099279855 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
7 Hb_119858_010 0.0103322594 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_085603_010 0.011553235 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
9 Hb_002121_060 0.0116901472 - - -
10 Hb_005511_110 0.0130462908 - - -
11 Hb_186580_020 0.0152148224 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
12 Hb_027970_010 0.0177919219 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_002189_020 0.0189803249 - - conserved hypothetical protein [Ricinus communis]
14 Hb_060997_010 0.0189803249 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
15 Hb_000698_050 0.0199927159 - - -
16 Hb_054511_010 0.0209743943 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
17 Hb_001821_040 0.0211798443 - - -
18 Hb_141689_020 0.0234937567 - - -
19 Hb_000832_260 0.024096094 - - Protein gar2, putative [Ricinus communis]
20 Hb_109050_010 0.024096094 - - -

Gene co-expression network

sample Hb_029344_010 Hb_029344_010 Hb_146757_010 Hb_146757_010 Hb_029344_010--Hb_146757_010 Hb_001227_050 Hb_001227_050 Hb_029344_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_029344_010--Hb_020367_060 Hb_000295_070 Hb_000295_070 Hb_029344_010--Hb_000295_070 Hb_062634_010 Hb_062634_010 Hb_029344_010--Hb_062634_010 Hb_119858_010 Hb_119858_010 Hb_029344_010--Hb_119858_010 Hb_146757_010--Hb_000295_070 Hb_146757_010--Hb_119858_010 Hb_002121_060 Hb_002121_060 Hb_146757_010--Hb_002121_060 Hb_146757_010--Hb_001227_050 Hb_146757_010--Hb_020367_060 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_062634_010 Hb_085603_010 Hb_085603_010 Hb_001227_050--Hb_085603_010 Hb_186580_020 Hb_186580_020 Hb_001227_050--Hb_186580_020 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_062634_010 Hb_001227_050--Hb_085603_010 Hb_001227_050--Hb_186580_020 Hb_000295_070--Hb_119858_010 Hb_000295_070--Hb_002121_060 Hb_005511_110 Hb_005511_110 Hb_000295_070--Hb_005511_110 Hb_000295_070--Hb_001227_050 Hb_062634_010--Hb_085603_010 Hb_062634_010--Hb_020367_060 Hb_062634_010--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_062634_010--Hb_027970_010 Hb_002189_020 Hb_002189_020 Hb_062634_010--Hb_002189_020 Hb_119858_010--Hb_002121_060 Hb_119858_010--Hb_005511_110 Hb_054511_010 Hb_054511_010 Hb_119858_010--Hb_054511_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.184859 0.692752

CAGE analysis