Hb_054511_010

Information

Type -
Description -
Location Contig54511: 429-728
Sequence    

Annotation

kegg
ID tcc:TCM_004340
description hypothetical protein
nr
ID XP_007050570.1
description Uncharacterized protein TCM_004340 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DQQ8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_004340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054511_010 0.0 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
2 Hb_141689_020 0.0025201658 - - -
3 Hb_005511_110 0.007929531 - - -
4 Hb_002121_060 0.0092857483 - - -
5 Hb_001755_010 0.0102718331 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
6 Hb_119858_010 0.0106436591 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_000295_070 0.0146918543 - - polyprotein [Oryza australiensis]
8 Hb_174258_010 0.0165820086 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
9 Hb_146757_010 0.0172850454 - - -
10 Hb_029344_010 0.0209743943 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_093161_010 0.0229859572 - - -
12 Hb_001227_050 0.0263558304 - - -
13 Hb_020367_060 0.0263558304 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
14 Hb_062634_010 0.0308979858 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
15 Hb_085603_010 0.0325222328 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
16 Hb_186580_020 0.0361812623 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
17 Hb_033165_010 0.0379980929 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_186064_010 0.0386342808 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_027970_010 0.0387563099 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_002189_020 0.0399436959 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054511_010 Hb_054511_010 Hb_141689_020 Hb_141689_020 Hb_054511_010--Hb_141689_020 Hb_005511_110 Hb_005511_110 Hb_054511_010--Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_054511_010--Hb_002121_060 Hb_001755_010 Hb_001755_010 Hb_054511_010--Hb_001755_010 Hb_119858_010 Hb_119858_010 Hb_054511_010--Hb_119858_010 Hb_000295_070 Hb_000295_070 Hb_054511_010--Hb_000295_070 Hb_141689_020--Hb_001755_010 Hb_141689_020--Hb_005511_110 Hb_141689_020--Hb_002121_060 Hb_141689_020--Hb_119858_010 Hb_174258_010 Hb_174258_010 Hb_141689_020--Hb_174258_010 Hb_005511_110--Hb_002121_060 Hb_005511_110--Hb_119858_010 Hb_005511_110--Hb_000295_070 Hb_146757_010 Hb_146757_010 Hb_005511_110--Hb_146757_010 Hb_002121_060--Hb_119858_010 Hb_002121_060--Hb_000295_070 Hb_002121_060--Hb_146757_010 Hb_029344_010 Hb_029344_010 Hb_002121_060--Hb_029344_010 Hb_001755_010--Hb_174258_010 Hb_093161_010 Hb_093161_010 Hb_001755_010--Hb_093161_010 Hb_001755_010--Hb_005511_110 Hb_001755_010--Hb_002121_060 Hb_119858_010--Hb_000295_070 Hb_119858_010--Hb_146757_010 Hb_119858_010--Hb_029344_010 Hb_000295_070--Hb_146757_010 Hb_000295_070--Hb_029344_010 Hb_001227_050 Hb_001227_050 Hb_000295_070--Hb_001227_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.136844 0.455233

CAGE analysis