Hb_001755_010

Information

Type -
Description -
Location Contig1755: 6229-7003
Sequence    

Annotation

kegg
ID tcc:TCM_018339
description hypothetical protein
nr
ID XP_012442205.1
description PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EG48
description Uncharacterized protein OS=Theobroma cacao GN=TCM_018339 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001755_010 0.0 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
2 Hb_174258_010 0.006310824 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
3 Hb_141689_020 0.0077517909 - - -
4 Hb_054511_010 0.0102718331 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
5 Hb_093161_010 0.012715918 - - -
6 Hb_005511_110 0.0182004357 - - -
7 Hb_002121_060 0.0195564108 - - -
8 Hb_119858_010 0.0209140541 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000295_070 0.0249613034 - - polyprotein [Oryza australiensis]
10 Hb_146757_010 0.0275537698 - - -
11 Hb_033165_010 0.0277325849 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_186064_010 0.0283690202 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_029344_010 0.0312419256 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_001980_040 0.0314589189 - - -
15 Hb_001216_020 0.0332908118 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_001833_030 0.0337099904 - - polyprotein [Oryza australiensis]
17 Hb_015866_010 0.0338585604 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_000127_150 0.0339666547 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
19 Hb_152910_030 0.0342171741 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
20 Hb_031318_010 0.0342196971 - - -

Gene co-expression network

sample Hb_001755_010 Hb_001755_010 Hb_174258_010 Hb_174258_010 Hb_001755_010--Hb_174258_010 Hb_141689_020 Hb_141689_020 Hb_001755_010--Hb_141689_020 Hb_054511_010 Hb_054511_010 Hb_001755_010--Hb_054511_010 Hb_093161_010 Hb_093161_010 Hb_001755_010--Hb_093161_010 Hb_005511_110 Hb_005511_110 Hb_001755_010--Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_001755_010--Hb_002121_060 Hb_174258_010--Hb_093161_010 Hb_174258_010--Hb_141689_020 Hb_174258_010--Hb_054511_010 Hb_033165_010 Hb_033165_010 Hb_174258_010--Hb_033165_010 Hb_186064_010 Hb_186064_010 Hb_174258_010--Hb_186064_010 Hb_141689_020--Hb_054511_010 Hb_141689_020--Hb_005511_110 Hb_141689_020--Hb_002121_060 Hb_119858_010 Hb_119858_010 Hb_141689_020--Hb_119858_010 Hb_054511_010--Hb_005511_110 Hb_054511_010--Hb_002121_060 Hb_054511_010--Hb_119858_010 Hb_000295_070 Hb_000295_070 Hb_054511_010--Hb_000295_070 Hb_093161_010--Hb_033165_010 Hb_093161_010--Hb_186064_010 Hb_001980_040 Hb_001980_040 Hb_093161_010--Hb_001980_040 Hb_093161_010--Hb_141689_020 Hb_005511_110--Hb_002121_060 Hb_005511_110--Hb_119858_010 Hb_005511_110--Hb_000295_070 Hb_146757_010 Hb_146757_010 Hb_005511_110--Hb_146757_010 Hb_002121_060--Hb_119858_010 Hb_002121_060--Hb_000295_070 Hb_002121_060--Hb_146757_010 Hb_029344_010 Hb_029344_010 Hb_002121_060--Hb_029344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0983935 0.309202

CAGE analysis