Hb_141689_020

Information

Type -
Description -
Location Contig141689: 10091-10384
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141689_020 0.0 - - -
2 Hb_054511_010 0.0025201658 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
3 Hb_001755_010 0.0077517909 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
4 Hb_005511_110 0.0104495645 - - -
5 Hb_002121_060 0.0118057387 - - -
6 Hb_119858_010 0.0131636001 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_174258_010 0.0140622015 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
8 Hb_000295_070 0.0172116119 - - polyprotein [Oryza australiensis]
9 Hb_146757_010 0.0198046563 - - -
10 Hb_093161_010 0.020466508 - - -
11 Hb_029344_010 0.0234937567 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_001227_050 0.0288747447 - - -
13 Hb_020367_060 0.0288747447 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
14 Hb_062634_010 0.0334164413 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
15 Hb_085603_010 0.035040506 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
16 Hb_033165_010 0.0354799352 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_186064_010 0.0361161914 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_186580_020 0.038699089 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
19 Hb_001980_040 0.0392051739 - - -
20 Hb_001216_020 0.0410364871 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_141689_020 Hb_141689_020 Hb_054511_010 Hb_054511_010 Hb_141689_020--Hb_054511_010 Hb_001755_010 Hb_001755_010 Hb_141689_020--Hb_001755_010 Hb_005511_110 Hb_005511_110 Hb_141689_020--Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_141689_020--Hb_002121_060 Hb_119858_010 Hb_119858_010 Hb_141689_020--Hb_119858_010 Hb_174258_010 Hb_174258_010 Hb_141689_020--Hb_174258_010 Hb_054511_010--Hb_005511_110 Hb_054511_010--Hb_002121_060 Hb_054511_010--Hb_001755_010 Hb_054511_010--Hb_119858_010 Hb_000295_070 Hb_000295_070 Hb_054511_010--Hb_000295_070 Hb_001755_010--Hb_174258_010 Hb_093161_010 Hb_093161_010 Hb_001755_010--Hb_093161_010 Hb_001755_010--Hb_005511_110 Hb_001755_010--Hb_002121_060 Hb_005511_110--Hb_002121_060 Hb_005511_110--Hb_119858_010 Hb_005511_110--Hb_000295_070 Hb_146757_010 Hb_146757_010 Hb_005511_110--Hb_146757_010 Hb_002121_060--Hb_119858_010 Hb_002121_060--Hb_000295_070 Hb_002121_060--Hb_146757_010 Hb_029344_010 Hb_029344_010 Hb_002121_060--Hb_029344_010 Hb_119858_010--Hb_000295_070 Hb_119858_010--Hb_146757_010 Hb_119858_010--Hb_029344_010 Hb_174258_010--Hb_093161_010 Hb_174258_010--Hb_054511_010 Hb_033165_010 Hb_033165_010 Hb_174258_010--Hb_033165_010 Hb_186064_010 Hb_186064_010 Hb_174258_010--Hb_186064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.144455 0.473847

CAGE analysis