Hb_174258_010

Information

Type -
Description -
Location Contig174258: 1299-1562
Sequence    

Annotation

kegg
ID mdm:103403272
description uncharacterized LOC103403272
nr
ID XP_012069095.1
description PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174258_010 0.0 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
2 Hb_001755_010 0.006310824 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
3 Hb_093161_010 0.0064053937 - - -
4 Hb_141689_020 0.0140622015 - - -
5 Hb_054511_010 0.0165820086 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
6 Hb_033165_010 0.0214238999 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_186064_010 0.0220604472 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_005511_110 0.024509541 - - -
9 Hb_001980_040 0.0251509283 - - -
10 Hb_002121_060 0.0258652819 - - -
11 Hb_001216_020 0.0269831962 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
12 Hb_119858_010 0.0272226755 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_001833_030 0.0274024637 - - polyprotein [Oryza australiensis]
14 Hb_015866_010 0.0275510655 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
15 Hb_000127_150 0.027659183 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
16 Hb_152910_030 0.0279097565 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
17 Hb_031318_010 0.0279122801 - - -
18 Hb_001102_280 0.0297353602 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_003793_040 0.0310539227 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
20 Hb_000295_070 0.0312690891 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_174258_010 Hb_174258_010 Hb_001755_010 Hb_001755_010 Hb_174258_010--Hb_001755_010 Hb_093161_010 Hb_093161_010 Hb_174258_010--Hb_093161_010 Hb_141689_020 Hb_141689_020 Hb_174258_010--Hb_141689_020 Hb_054511_010 Hb_054511_010 Hb_174258_010--Hb_054511_010 Hb_033165_010 Hb_033165_010 Hb_174258_010--Hb_033165_010 Hb_186064_010 Hb_186064_010 Hb_174258_010--Hb_186064_010 Hb_001755_010--Hb_141689_020 Hb_001755_010--Hb_054511_010 Hb_001755_010--Hb_093161_010 Hb_005511_110 Hb_005511_110 Hb_001755_010--Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_001755_010--Hb_002121_060 Hb_093161_010--Hb_033165_010 Hb_093161_010--Hb_186064_010 Hb_001980_040 Hb_001980_040 Hb_093161_010--Hb_001980_040 Hb_093161_010--Hb_141689_020 Hb_141689_020--Hb_054511_010 Hb_141689_020--Hb_005511_110 Hb_141689_020--Hb_002121_060 Hb_119858_010 Hb_119858_010 Hb_141689_020--Hb_119858_010 Hb_054511_010--Hb_005511_110 Hb_054511_010--Hb_002121_060 Hb_054511_010--Hb_119858_010 Hb_000295_070 Hb_000295_070 Hb_054511_010--Hb_000295_070 Hb_033165_010--Hb_186064_010 Hb_033165_010--Hb_001980_040 Hb_001216_020 Hb_001216_020 Hb_033165_010--Hb_001216_020 Hb_001833_030 Hb_001833_030 Hb_033165_010--Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_033165_010--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_033165_010--Hb_000127_150 Hb_186064_010--Hb_001980_040 Hb_186064_010--Hb_001216_020 Hb_186064_010--Hb_001833_030 Hb_186064_010--Hb_015866_010 Hb_186064_010--Hb_000127_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196202 0.595613

CAGE analysis