Hb_033165_010

Information

Type -
Description -
Location Contig33165: 22757-27344
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033165_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_186064_010 0.0006367123 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001980_040 0.0037281248 - - -
4 Hb_001216_020 0.0055610465 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
5 Hb_001833_030 0.0059804741 - - polyprotein [Oryza australiensis]
6 Hb_015866_010 0.0061291336 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_000127_150 0.0062372934 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
8 Hb_152910_030 0.006487966 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
9 Hb_031318_010 0.0064904905 - - -
10 Hb_001102_280 0.0083143331 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_003793_040 0.0096334927 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
12 Hb_105251_010 0.0110885187 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_093161_010 0.015019661 - - -
14 Hb_005465_050 0.0165446201 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
15 Hb_174258_010 0.0214238999 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
16 Hb_001755_010 0.0277325849 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
17 Hb_056506_090 0.0282317959 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_153924_010 0.0289830995 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
19 Hb_141689_020 0.0354799352 - - -
20 Hb_000312_030 0.0359248209 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_033165_010 Hb_033165_010 Hb_186064_010 Hb_186064_010 Hb_033165_010--Hb_186064_010 Hb_001980_040 Hb_001980_040 Hb_033165_010--Hb_001980_040 Hb_001216_020 Hb_001216_020 Hb_033165_010--Hb_001216_020 Hb_001833_030 Hb_001833_030 Hb_033165_010--Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_033165_010--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_033165_010--Hb_000127_150 Hb_186064_010--Hb_001980_040 Hb_186064_010--Hb_001216_020 Hb_186064_010--Hb_001833_030 Hb_186064_010--Hb_015866_010 Hb_186064_010--Hb_000127_150 Hb_001980_040--Hb_001216_020 Hb_001980_040--Hb_001833_030 Hb_001980_040--Hb_015866_010 Hb_001980_040--Hb_000127_150 Hb_152910_030 Hb_152910_030 Hb_001980_040--Hb_152910_030 Hb_031318_010 Hb_031318_010 Hb_001980_040--Hb_031318_010 Hb_001216_020--Hb_001833_030 Hb_001216_020--Hb_015866_010 Hb_001216_020--Hb_000127_150 Hb_001216_020--Hb_152910_030 Hb_001216_020--Hb_031318_010 Hb_001833_030--Hb_015866_010 Hb_001833_030--Hb_000127_150 Hb_001833_030--Hb_152910_030 Hb_001833_030--Hb_031318_010 Hb_015866_010--Hb_000127_150 Hb_015866_010--Hb_152910_030 Hb_015866_010--Hb_031318_010 Hb_001102_280 Hb_001102_280 Hb_015866_010--Hb_001102_280 Hb_000127_150--Hb_152910_030 Hb_000127_150--Hb_031318_010 Hb_000127_150--Hb_001102_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00674081 0.0182361

CAGE analysis