Hb_005511_110

Information

Type -
Description -
Location Contig5511: 93378-94759
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48275: 93493-95180
cDNA
(Sanger)
(ID:Location)		 040_P14.ab1: 94437-95180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_110 0.0 - - -
2 Hb_002121_060 0.0013562818 - - -
3 Hb_119858_010 0.0027142763 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_000295_070 0.0067628365 - - polyprotein [Oryza australiensis]
5 Hb_054511_010 0.007929531 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
6 Hb_146757_010 0.0093563531 - - -
7 Hb_141689_020 0.0104495645 - - -
8 Hb_029344_010 0.0130462908 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_001755_010 0.0182004357 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
10 Hb_001227_050 0.0184288553 - - -
11 Hb_020367_060 0.0184288553 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
12 Hb_062634_010 0.0229722174 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
13 Hb_174258_010 0.024509541 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
14 Hb_085603_010 0.0245969534 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
15 Hb_186580_020 0.0282571976 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
16 Hb_027970_010 0.0308331949 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_093161_010 0.0309120281 - - -
18 Hb_002189_020 0.0320210455 - - conserved hypothetical protein [Ricinus communis]
19 Hb_060997_010 0.0320210455 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
20 Hb_000698_050 0.0330329436 - - -

Gene co-expression network

sample Hb_005511_110 Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_005511_110--Hb_002121_060 Hb_119858_010 Hb_119858_010 Hb_005511_110--Hb_119858_010 Hb_000295_070 Hb_000295_070 Hb_005511_110--Hb_000295_070 Hb_054511_010 Hb_054511_010 Hb_005511_110--Hb_054511_010 Hb_146757_010 Hb_146757_010 Hb_005511_110--Hb_146757_010 Hb_141689_020 Hb_141689_020 Hb_005511_110--Hb_141689_020 Hb_002121_060--Hb_119858_010 Hb_002121_060--Hb_000295_070 Hb_002121_060--Hb_146757_010 Hb_002121_060--Hb_054511_010 Hb_029344_010 Hb_029344_010 Hb_002121_060--Hb_029344_010 Hb_119858_010--Hb_000295_070 Hb_119858_010--Hb_146757_010 Hb_119858_010--Hb_029344_010 Hb_119858_010--Hb_054511_010 Hb_000295_070--Hb_146757_010 Hb_000295_070--Hb_029344_010 Hb_001227_050 Hb_001227_050 Hb_000295_070--Hb_001227_050 Hb_054511_010--Hb_141689_020 Hb_001755_010 Hb_001755_010 Hb_054511_010--Hb_001755_010 Hb_054511_010--Hb_000295_070 Hb_146757_010--Hb_029344_010 Hb_146757_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_146757_010--Hb_020367_060 Hb_141689_020--Hb_001755_010 Hb_141689_020--Hb_002121_060 Hb_141689_020--Hb_119858_010 Hb_174258_010 Hb_174258_010 Hb_141689_020--Hb_174258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.117081 0.407238

CAGE analysis