Hb_000295_070

Information

Type -
Description -
Location Contig295: 81532-88616
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_070 0.0 - - polyprotein [Oryza australiensis]
2 Hb_146757_010 0.0025936265 - - -
3 Hb_119858_010 0.0040486094 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_002121_060 0.0054065874 - - -
5 Hb_029344_010 0.0062838279 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_005511_110 0.0067628365 - - -
7 Hb_001227_050 0.0116670072 - - -
8 Hb_020367_060 0.0116670072 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
9 Hb_054511_010 0.0146918543 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
10 Hb_062634_010 0.0162111056 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
11 Hb_141689_020 0.0172116119 - - -
12 Hb_085603_010 0.0178361543 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
13 Hb_186580_020 0.0214971991 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
14 Hb_027970_010 0.0240738411 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_001755_010 0.0249613034 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
16 Hb_002189_020 0.0252620119 - - conserved hypothetical protein [Ricinus communis]
17 Hb_060997_010 0.0252620119 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
18 Hb_000698_050 0.0262741942 - - -
19 Hb_001821_040 0.0274610655 - - -
20 Hb_000832_260 0.0303766252 - - Protein gar2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000295_070 Hb_000295_070 Hb_146757_010 Hb_146757_010 Hb_000295_070--Hb_146757_010 Hb_119858_010 Hb_119858_010 Hb_000295_070--Hb_119858_010 Hb_002121_060 Hb_002121_060 Hb_000295_070--Hb_002121_060 Hb_029344_010 Hb_029344_010 Hb_000295_070--Hb_029344_010 Hb_005511_110 Hb_005511_110 Hb_000295_070--Hb_005511_110 Hb_001227_050 Hb_001227_050 Hb_000295_070--Hb_001227_050 Hb_146757_010--Hb_029344_010 Hb_146757_010--Hb_119858_010 Hb_146757_010--Hb_002121_060 Hb_146757_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_146757_010--Hb_020367_060 Hb_119858_010--Hb_002121_060 Hb_119858_010--Hb_005511_110 Hb_119858_010--Hb_029344_010 Hb_054511_010 Hb_054511_010 Hb_119858_010--Hb_054511_010 Hb_002121_060--Hb_005511_110 Hb_002121_060--Hb_054511_010 Hb_002121_060--Hb_029344_010 Hb_029344_010--Hb_001227_050 Hb_029344_010--Hb_020367_060 Hb_062634_010 Hb_062634_010 Hb_029344_010--Hb_062634_010 Hb_005511_110--Hb_054511_010 Hb_005511_110--Hb_146757_010 Hb_141689_020 Hb_141689_020 Hb_005511_110--Hb_141689_020 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_062634_010 Hb_085603_010 Hb_085603_010 Hb_001227_050--Hb_085603_010 Hb_186580_020 Hb_186580_020 Hb_001227_050--Hb_186580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00887518 0.0320801

CAGE analysis