Hb_062634_010

Information

Type -
Description -
Location Contig62634: 7-384
Sequence    

Annotation

kegg
ID cmo:103502884
description uncharacterized LOC103502884
nr
ID XP_012075355.1
description PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062634_010 0.0 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
2 Hb_085603_010 0.001625384 - - PREDICTED: uncharacterized protein LOC101296995 [Fragaria vesca subsp. vesca]
3 Hb_001227_050 0.0045447055 - - -
4 Hb_020367_060 0.0045447055 - - hypothetical protein POPTR_0005s15010g [Populus trichocarpa]
5 Hb_186580_020 0.0052874166 - - PREDICTED: uncharacterized protein LOC103426965 [Malus domestica]
6 Hb_027970_010 0.0078649492 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_002189_020 0.0090535858 - - conserved hypothetical protein [Ricinus communis]
8 Hb_060997_010 0.0090535858 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
9 Hb_029344_010 0.0099279855 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_000698_050 0.0100661926 - - -
11 Hb_001821_040 0.0112535941 - - -
12 Hb_146757_010 0.0136178773 - - -
13 Hb_000832_260 0.014170607 - - Protein gar2, putative [Ricinus communis]
14 Hb_109050_010 0.014170607 - - -
15 Hb_011980_030 0.0158998536 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000295_070 0.0162111056 - - polyprotein [Oryza australiensis]
17 Hb_060300_010 0.0183419908 - - hypothetical protein F383_16817 [Gossypium arboreum]
18 Hb_001988_040 0.0189330471 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
19 Hb_119858_010 0.0202588004 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_002121_060 0.0216163927 - - -

Gene co-expression network

sample Hb_062634_010 Hb_062634_010 Hb_085603_010 Hb_085603_010 Hb_062634_010--Hb_085603_010 Hb_001227_050 Hb_001227_050 Hb_062634_010--Hb_001227_050 Hb_020367_060 Hb_020367_060 Hb_062634_010--Hb_020367_060 Hb_186580_020 Hb_186580_020 Hb_062634_010--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_062634_010--Hb_027970_010 Hb_002189_020 Hb_002189_020 Hb_062634_010--Hb_002189_020 Hb_085603_010--Hb_186580_020 Hb_085603_010--Hb_001227_050 Hb_085603_010--Hb_020367_060 Hb_085603_010--Hb_027970_010 Hb_085603_010--Hb_002189_020 Hb_001227_050--Hb_020367_060 Hb_029344_010 Hb_029344_010 Hb_001227_050--Hb_029344_010 Hb_146757_010 Hb_146757_010 Hb_001227_050--Hb_146757_010 Hb_001227_050--Hb_186580_020 Hb_001227_050--Hb_020367_060 Hb_001227_050--Hb_029344_010 Hb_001227_050--Hb_146757_010 Hb_001227_050--Hb_186580_020 Hb_186580_020--Hb_027970_010 Hb_186580_020--Hb_002189_020 Hb_060997_010 Hb_060997_010 Hb_186580_020--Hb_060997_010 Hb_000698_050 Hb_000698_050 Hb_186580_020--Hb_000698_050 Hb_027970_010--Hb_002189_020 Hb_027970_010--Hb_060997_010 Hb_027970_010--Hb_000698_050 Hb_001821_040 Hb_001821_040 Hb_027970_010--Hb_001821_040 Hb_002189_020--Hb_060997_010 Hb_002189_020--Hb_000698_050 Hb_002189_020--Hb_001821_040 Hb_000832_260 Hb_000832_260 Hb_002189_020--Hb_000832_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0758941 0.30134

CAGE analysis