Hb_093161_010

Information

Type -
Description -
Location Contig93161: 3538-5058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093161_010 0.0 - - -
2 Hb_174258_010 0.0064053937 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
3 Hb_001755_010 0.012715918 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]
4 Hb_033165_010 0.015019661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_186064_010 0.015656292 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_001980_040 0.0187472179 - - -
7 Hb_141689_020 0.020466508 - - -
8 Hb_001216_020 0.0205797799 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
9 Hb_001833_030 0.0209991178 - - polyprotein [Oryza australiensis]
10 Hb_015866_010 0.0211477448 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_000127_150 0.0212558808 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
12 Hb_152910_030 0.0215064974 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
13 Hb_031318_010 0.0215090214 - - -
14 Hb_054511_010 0.0229859572 - - Uncharacterized protein TCM_004340 [Theobroma cacao]
15 Hb_001102_280 0.0233324275 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_003793_040 0.0246512394 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
17 Hb_105251_010 0.0261058507 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_005511_110 0.0309120281 - - -
19 Hb_005465_050 0.0315601109 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
20 Hb_002121_060 0.0322674672 - - -

Gene co-expression network

sample Hb_093161_010 Hb_093161_010 Hb_174258_010 Hb_174258_010 Hb_093161_010--Hb_174258_010 Hb_001755_010 Hb_001755_010 Hb_093161_010--Hb_001755_010 Hb_033165_010 Hb_033165_010 Hb_093161_010--Hb_033165_010 Hb_186064_010 Hb_186064_010 Hb_093161_010--Hb_186064_010 Hb_001980_040 Hb_001980_040 Hb_093161_010--Hb_001980_040 Hb_141689_020 Hb_141689_020 Hb_093161_010--Hb_141689_020 Hb_174258_010--Hb_001755_010 Hb_174258_010--Hb_141689_020 Hb_054511_010 Hb_054511_010 Hb_174258_010--Hb_054511_010 Hb_174258_010--Hb_033165_010 Hb_174258_010--Hb_186064_010 Hb_001755_010--Hb_141689_020 Hb_001755_010--Hb_054511_010 Hb_005511_110 Hb_005511_110 Hb_001755_010--Hb_005511_110 Hb_002121_060 Hb_002121_060 Hb_001755_010--Hb_002121_060 Hb_033165_010--Hb_186064_010 Hb_033165_010--Hb_001980_040 Hb_001216_020 Hb_001216_020 Hb_033165_010--Hb_001216_020 Hb_001833_030 Hb_001833_030 Hb_033165_010--Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_033165_010--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_033165_010--Hb_000127_150 Hb_186064_010--Hb_001980_040 Hb_186064_010--Hb_001216_020 Hb_186064_010--Hb_001833_030 Hb_186064_010--Hb_015866_010 Hb_186064_010--Hb_000127_150 Hb_001980_040--Hb_001216_020 Hb_001980_040--Hb_001833_030 Hb_001980_040--Hb_015866_010 Hb_001980_040--Hb_000127_150 Hb_152910_030 Hb_152910_030 Hb_001980_040--Hb_152910_030 Hb_031318_010 Hb_031318_010 Hb_001980_040--Hb_031318_010 Hb_141689_020--Hb_054511_010 Hb_141689_020--Hb_005511_110 Hb_141689_020--Hb_002121_060 Hb_119858_010 Hb_119858_010 Hb_141689_020--Hb_119858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.224277 0.657564

CAGE analysis