Hb_001461_030

Information

Type -
Description -
Location Contig1461: 16514-17253
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001461_030 0.0 - - -
2 Hb_024415_010 0.0005137374 - - -
3 Hb_004048_040 0.0017322415 - - -
4 Hb_000573_080 0.0020781732 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
5 Hb_007120_110 0.0020931354 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
6 Hb_047399_010 0.00292047 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
7 Hb_100500_010 0.0037011746 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
8 Hb_007668_030 0.0053483796 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
9 Hb_000581_070 0.0058809149 - - -
10 Hb_098361_010 0.0063397009 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
11 Hb_001221_420 0.0066003871 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
12 Hb_047387_010 0.0066922397 - - -
13 Hb_056867_010 0.0077197238 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
14 Hb_118840_040 0.0078001055 - - -
15 Hb_135866_010 0.0079588467 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
16 Hb_007426_020 0.009319733 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_001988_040 0.0098732294 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
18 Hb_005976_100 0.0103176005 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
19 Hb_000692_050 0.0104300491 - - -
20 Hb_060300_010 0.0104643958 - - hypothetical protein F383_16817 [Gossypium arboreum]

Gene co-expression network

sample Hb_001461_030 Hb_001461_030 Hb_024415_010 Hb_024415_010 Hb_001461_030--Hb_024415_010 Hb_004048_040 Hb_004048_040 Hb_001461_030--Hb_004048_040 Hb_000573_080 Hb_000573_080 Hb_001461_030--Hb_000573_080 Hb_007120_110 Hb_007120_110 Hb_001461_030--Hb_007120_110 Hb_047399_010 Hb_047399_010 Hb_001461_030--Hb_047399_010 Hb_100500_010 Hb_100500_010 Hb_001461_030--Hb_100500_010 Hb_024415_010--Hb_004048_040 Hb_024415_010--Hb_000573_080 Hb_024415_010--Hb_047399_010 Hb_024415_010--Hb_007120_110 Hb_024415_010--Hb_100500_010 Hb_004048_040--Hb_000573_080 Hb_004048_040--Hb_047399_010 Hb_004048_040--Hb_100500_010 Hb_004048_040--Hb_007120_110 Hb_000573_080--Hb_047399_010 Hb_000573_080--Hb_100500_010 Hb_000573_080--Hb_007120_110 Hb_007668_030 Hb_007668_030 Hb_007120_110--Hb_007668_030 Hb_000581_070 Hb_000581_070 Hb_007120_110--Hb_000581_070 Hb_047399_010--Hb_100500_010 Hb_001221_420 Hb_001221_420 Hb_047399_010--Hb_001221_420 Hb_100500_010--Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_100500_010--Hb_047387_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0322949 0.152566

CAGE analysis