Hb_047399_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig47399: 36-741
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37646.1
description NBS-LRR resistance protein RGH2 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XF9
description NBS-LRR resistance protein RGH2 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047399_010 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
2 Hb_100500_010 0.0007807118 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
3 Hb_000573_080 0.0008423013 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
4 Hb_004048_040 0.0011882338 - - -
5 Hb_024415_010 0.0024067358 - - -
6 Hb_001461_030 0.00292047 - - -
7 Hb_001221_420 0.0036799788 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
8 Hb_047387_010 0.0037718339 - - -
9 Hb_056867_010 0.0047993482 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_118840_040 0.0048797325 - - -
11 Hb_007120_110 0.0050135792 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_135866_010 0.0050384789 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
13 Hb_007426_020 0.0063994154 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_005976_100 0.007397326 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
15 Hb_000692_050 0.0075097797 - - -
16 Hb_007668_030 0.0082687397 - - PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis]
17 Hb_000552_050 0.0085450734 - - -
18 Hb_000581_070 0.0088012564 - - -
19 Hb_098361_010 0.0092600253 - - PREDICTED: uncharacterized protein LOC105118398 [Populus euphratica]
20 Hb_005411_010 0.0092654438 - - -

Gene co-expression network

sample Hb_047399_010 Hb_047399_010 Hb_100500_010 Hb_100500_010 Hb_047399_010--Hb_100500_010 Hb_000573_080 Hb_000573_080 Hb_047399_010--Hb_000573_080 Hb_004048_040 Hb_004048_040 Hb_047399_010--Hb_004048_040 Hb_024415_010 Hb_024415_010 Hb_047399_010--Hb_024415_010 Hb_001461_030 Hb_001461_030 Hb_047399_010--Hb_001461_030 Hb_001221_420 Hb_001221_420 Hb_047399_010--Hb_001221_420 Hb_100500_010--Hb_000573_080 Hb_100500_010--Hb_004048_040 Hb_100500_010--Hb_001221_420 Hb_047387_010 Hb_047387_010 Hb_100500_010--Hb_047387_010 Hb_100500_010--Hb_024415_010 Hb_000573_080--Hb_004048_040 Hb_000573_080--Hb_024415_010 Hb_000573_080--Hb_001461_030 Hb_007120_110 Hb_007120_110 Hb_000573_080--Hb_007120_110 Hb_004048_040--Hb_024415_010 Hb_004048_040--Hb_001461_030 Hb_004048_040--Hb_007120_110 Hb_024415_010--Hb_001461_030 Hb_024415_010--Hb_007120_110 Hb_001461_030--Hb_007120_110 Hb_001461_030--Hb_100500_010 Hb_001221_420--Hb_047387_010 Hb_056867_010 Hb_056867_010 Hb_001221_420--Hb_056867_010 Hb_118840_040 Hb_118840_040 Hb_001221_420--Hb_118840_040 Hb_135866_010 Hb_135866_010 Hb_001221_420--Hb_135866_010 Hb_007426_020 Hb_007426_020 Hb_001221_420--Hb_007426_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0281879 0.135605

CAGE analysis