Hb_007426_020

Information

Type -
Description -
Location Contig7426: 27454-30221
Sequence    

Annotation

kegg
ID pmum:103327222
description uncharacterized LOC103327222
nr
ID AAQ56320.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q6UUQ3
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0079I01.33 PE=4 SV=1
Gene Ontology
ID GO:0044260
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_020 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_005976_100 0.0009979528 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
3 Hb_000692_050 0.001110412 - - -
4 Hb_135866_010 0.0013609755 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
5 Hb_118840_040 0.0015197251 - - -
6 Hb_056867_010 0.0016001109 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
7 Hb_000552_050 0.002145763 - - -
8 Hb_047387_010 0.0026276378 - - -
9 Hb_001221_420 0.0027194934 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
10 Hb_005411_010 0.0028661807 - - -
11 Hb_011675_010 0.0031021601 - - -
12 Hb_001385_030 0.0034582745 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
13 Hb_015036_010 0.0034583912 - - -
14 Hb_160953_010 0.0040399558 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
15 Hb_003634_020 0.0041421694 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
16 Hb_187610_010 0.0044698277 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
17 Hb_000172_170 0.0046252372 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
18 Hb_000005_200 0.0048221317 - - -
19 Hb_071517_010 0.0050675643 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
20 Hb_100500_010 0.0056187283 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]

Gene co-expression network

sample Hb_007426_020 Hb_007426_020 Hb_005976_100 Hb_005976_100 Hb_007426_020--Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_007426_020--Hb_000692_050 Hb_135866_010 Hb_135866_010 Hb_007426_020--Hb_135866_010 Hb_118840_040 Hb_118840_040 Hb_007426_020--Hb_118840_040 Hb_056867_010 Hb_056867_010 Hb_007426_020--Hb_056867_010 Hb_000552_050 Hb_000552_050 Hb_007426_020--Hb_000552_050 Hb_005976_100--Hb_000692_050 Hb_005976_100--Hb_000552_050 Hb_005411_010 Hb_005411_010 Hb_005976_100--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_005976_100--Hb_011675_010 Hb_005976_100--Hb_135866_010 Hb_000692_050--Hb_000552_050 Hb_000692_050--Hb_005411_010 Hb_000692_050--Hb_011675_010 Hb_001385_030 Hb_001385_030 Hb_000692_050--Hb_001385_030 Hb_135866_010--Hb_118840_040 Hb_135866_010--Hb_056867_010 Hb_047387_010 Hb_047387_010 Hb_135866_010--Hb_047387_010 Hb_001221_420 Hb_001221_420 Hb_135866_010--Hb_001221_420 Hb_118840_040--Hb_056867_010 Hb_118840_040--Hb_047387_010 Hb_118840_040--Hb_001221_420 Hb_118840_040--Hb_005976_100 Hb_056867_010--Hb_047387_010 Hb_056867_010--Hb_001221_420 Hb_056867_010--Hb_005976_100 Hb_000552_050--Hb_005411_010 Hb_000552_050--Hb_011675_010 Hb_000552_050--Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_000552_050--Hb_015036_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0193706 0.0970085

CAGE analysis