Hb_000692_050

Information

Type -
Description -
Location Contig692: 63690-66100
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000692_050 0.0 - - -
2 Hb_005976_100 0.0001124593 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
3 Hb_000552_050 0.0010353532 - - -
4 Hb_007426_020 0.001110412 - - putative polyprotein [Oryza sativa Japonica Group]
5 Hb_005411_010 0.0017557739 - - -
6 Hb_011675_010 0.0019917544 - - -
7 Hb_001385_030 0.0023478707 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
8 Hb_015036_010 0.0023479875 - - -
9 Hb_135866_010 0.0024713841 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
10 Hb_118840_040 0.002630133 - - -
11 Hb_056867_010 0.0027105185 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
12 Hb_160953_010 0.0029295558 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
13 Hb_003634_020 0.0030317702 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
14 Hb_187610_010 0.0033594309 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
15 Hb_000172_170 0.0035148417 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
16 Hb_000005_200 0.0037117378 - - -
17 Hb_047387_010 0.0037380399 - - -
18 Hb_001221_420 0.003829895 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
19 Hb_071517_010 0.0039571727 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
20 Hb_006150_040 0.0047323353 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]

Gene co-expression network

sample Hb_000692_050 Hb_000692_050 Hb_005976_100 Hb_005976_100 Hb_000692_050--Hb_005976_100 Hb_000552_050 Hb_000552_050 Hb_000692_050--Hb_000552_050 Hb_007426_020 Hb_007426_020 Hb_000692_050--Hb_007426_020 Hb_005411_010 Hb_005411_010 Hb_000692_050--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_000692_050--Hb_011675_010 Hb_001385_030 Hb_001385_030 Hb_000692_050--Hb_001385_030 Hb_005976_100--Hb_007426_020 Hb_005976_100--Hb_000552_050 Hb_005976_100--Hb_005411_010 Hb_005976_100--Hb_011675_010 Hb_135866_010 Hb_135866_010 Hb_005976_100--Hb_135866_010 Hb_000552_050--Hb_005411_010 Hb_000552_050--Hb_011675_010 Hb_000552_050--Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_000552_050--Hb_015036_010 Hb_007426_020--Hb_135866_010 Hb_118840_040 Hb_118840_040 Hb_007426_020--Hb_118840_040 Hb_056867_010 Hb_056867_010 Hb_007426_020--Hb_056867_010 Hb_007426_020--Hb_000552_050 Hb_005411_010--Hb_011675_010 Hb_005411_010--Hb_001385_030 Hb_005411_010--Hb_015036_010 Hb_160953_010 Hb_160953_010 Hb_005411_010--Hb_160953_010 Hb_003634_020 Hb_003634_020 Hb_005411_010--Hb_003634_020 Hb_011675_010--Hb_001385_030 Hb_011675_010--Hb_015036_010 Hb_011675_010--Hb_160953_010 Hb_011675_010--Hb_003634_020 Hb_001385_030--Hb_015036_010 Hb_001385_030--Hb_160953_010 Hb_001385_030--Hb_003634_020 Hb_187610_010 Hb_187610_010 Hb_001385_030--Hb_187610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0178641 0.0900949

CAGE analysis