Hb_003634_020

Information

Type -
Description -
Location Contig3634: 66425-71176
Sequence    

Annotation

kegg
ID tcc:TCM_023017
description hypothetical protein
nr
ID XP_012453364.1
description PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EV23
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023017 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003634_020 0.0 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
2 Hb_160953_010 0.0001022152 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
3 Hb_187610_010 0.0003276638 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
4 Hb_000172_170 0.0004830762 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
5 Hb_000005_200 0.0006799747 - - -
6 Hb_015036_010 0.0006837872 - - -
7 Hb_001385_030 0.0006839039 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
8 Hb_071517_010 0.0009254127 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
9 Hb_011675_010 0.0010400216 - - -
10 Hb_005411_010 0.0012760026 - - -
11 Hb_006150_040 0.0017005876 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
12 Hb_000552_050 0.0019964227 - - -
13 Hb_121451_010 0.0026375389 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000692_050 0.0030317702 - - -
15 Hb_005976_100 0.0031442285 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
16 Hb_002794_020 0.0033937801 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
17 Hb_001408_190 0.0034399426 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_166645_010 0.0035008475 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
19 Hb_008673_010 0.0037060365 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
20 Hb_012595_030 0.00405291 - - -

Gene co-expression network

sample Hb_003634_020 Hb_003634_020 Hb_160953_010 Hb_160953_010 Hb_003634_020--Hb_160953_010 Hb_187610_010 Hb_187610_010 Hb_003634_020--Hb_187610_010 Hb_000172_170 Hb_000172_170 Hb_003634_020--Hb_000172_170 Hb_000005_200 Hb_000005_200 Hb_003634_020--Hb_000005_200 Hb_015036_010 Hb_015036_010 Hb_003634_020--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_003634_020--Hb_001385_030 Hb_160953_010--Hb_187610_010 Hb_160953_010--Hb_015036_010 Hb_160953_010--Hb_001385_030 Hb_160953_010--Hb_000172_170 Hb_160953_010--Hb_000005_200 Hb_187610_010--Hb_000172_170 Hb_187610_010--Hb_000005_200 Hb_071517_010 Hb_071517_010 Hb_187610_010--Hb_071517_010 Hb_187610_010--Hb_015036_010 Hb_000172_170--Hb_000005_200 Hb_000172_170--Hb_071517_010 Hb_000172_170--Hb_015036_010 Hb_000005_200--Hb_071517_010 Hb_006150_040 Hb_006150_040 Hb_000005_200--Hb_006150_040 Hb_015036_010--Hb_001385_030 Hb_011675_010 Hb_011675_010 Hb_015036_010--Hb_011675_010 Hb_005411_010 Hb_005411_010 Hb_015036_010--Hb_005411_010 Hb_001385_030--Hb_011675_010 Hb_001385_030--Hb_005411_010 Hb_001385_030--Hb_187610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0137888 0.0708951

CAGE analysis