Hb_000005_200

Information

Type -
Description -
Location Contig5: 213844-214062
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45696: 212268-239347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_200 0.0 - - -
2 Hb_000172_170 0.0001968985 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
3 Hb_071517_010 0.0002454381 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
4 Hb_187610_010 0.000352311 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
5 Hb_003634_020 0.0006799747 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_160953_010 0.0007821899 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_006150_040 0.001020614 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
8 Hb_015036_010 0.0013637613 - - -
9 Hb_001385_030 0.001363878 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
10 Hb_011675_010 0.0017199952 - - -
11 Hb_005411_010 0.0019559757 - - -
12 Hb_121451_010 0.0019575675 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_000552_050 0.002676394 - - -
14 Hb_002794_020 0.0027138112 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
15 Hb_001408_190 0.0027599739 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_166645_010 0.002820879 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
17 Hb_008673_010 0.0030260689 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
18 Hb_012595_030 0.003372944 - - -
19 Hb_004346_020 0.0037090414 - - conserved hypothetical protein [Ricinus communis]
20 Hb_171554_030 0.0037090414 - - -

Gene co-expression network

sample Hb_000005_200 Hb_000005_200 Hb_000172_170 Hb_000172_170 Hb_000005_200--Hb_000172_170 Hb_071517_010 Hb_071517_010 Hb_000005_200--Hb_071517_010 Hb_187610_010 Hb_187610_010 Hb_000005_200--Hb_187610_010 Hb_003634_020 Hb_003634_020 Hb_000005_200--Hb_003634_020 Hb_160953_010 Hb_160953_010 Hb_000005_200--Hb_160953_010 Hb_006150_040 Hb_006150_040 Hb_000005_200--Hb_006150_040 Hb_000172_170--Hb_187610_010 Hb_000172_170--Hb_071517_010 Hb_000172_170--Hb_003634_020 Hb_000172_170--Hb_160953_010 Hb_015036_010 Hb_015036_010 Hb_000172_170--Hb_015036_010 Hb_071517_010--Hb_187610_010 Hb_071517_010--Hb_006150_040 Hb_071517_010--Hb_003634_020 Hb_071517_010--Hb_160953_010 Hb_187610_010--Hb_003634_020 Hb_187610_010--Hb_160953_010 Hb_187610_010--Hb_015036_010 Hb_003634_020--Hb_160953_010 Hb_003634_020--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_003634_020--Hb_001385_030 Hb_160953_010--Hb_015036_010 Hb_160953_010--Hb_001385_030 Hb_121451_010 Hb_121451_010 Hb_006150_040--Hb_121451_010 Hb_006150_040--Hb_000172_170 Hb_006150_040--Hb_187610_010 Hb_002794_020 Hb_002794_020 Hb_006150_040--Hb_002794_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.375316 1.93808

CAGE analysis