Hb_071517_010

Information

Type -
Description -
Location Contig71517: 2305-5689
Sequence    

Annotation

kegg
ID cic:CICLE_v10010288mg
description hypothetical protein
nr
ID XP_006451566.1
description hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UQQ7
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010288mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071517_010 0.0 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
2 Hb_000005_200 0.0002454381 - - -
3 Hb_000172_170 0.0004423366 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
4 Hb_187610_010 0.0005977491 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
5 Hb_006150_040 0.0007751761 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
6 Hb_003634_020 0.0009254127 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_160953_010 0.0010276278 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
8 Hb_015036_010 0.001609199 - - -
9 Hb_001385_030 0.0016093157 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
10 Hb_121451_010 0.0017121301 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_011675_010 0.0019654325 - - -
12 Hb_005411_010 0.0022014129 - - -
13 Hb_002794_020 0.0024683746 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
14 Hb_001408_190 0.0025145374 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
15 Hb_166645_010 0.0025754426 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
16 Hb_008673_010 0.0027806327 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
17 Hb_000552_050 0.0029218304 - - -
18 Hb_012595_030 0.0031275083 - - -
19 Hb_004346_020 0.0034636062 - - conserved hypothetical protein [Ricinus communis]
20 Hb_171554_030 0.0034636062 - - -

Gene co-expression network

sample Hb_071517_010 Hb_071517_010 Hb_000005_200 Hb_000005_200 Hb_071517_010--Hb_000005_200 Hb_000172_170 Hb_000172_170 Hb_071517_010--Hb_000172_170 Hb_187610_010 Hb_187610_010 Hb_071517_010--Hb_187610_010 Hb_006150_040 Hb_006150_040 Hb_071517_010--Hb_006150_040 Hb_003634_020 Hb_003634_020 Hb_071517_010--Hb_003634_020 Hb_160953_010 Hb_160953_010 Hb_071517_010--Hb_160953_010 Hb_000005_200--Hb_000172_170 Hb_000005_200--Hb_187610_010 Hb_000005_200--Hb_003634_020 Hb_000005_200--Hb_160953_010 Hb_000005_200--Hb_006150_040 Hb_000172_170--Hb_187610_010 Hb_000172_170--Hb_003634_020 Hb_000172_170--Hb_160953_010 Hb_015036_010 Hb_015036_010 Hb_000172_170--Hb_015036_010 Hb_187610_010--Hb_003634_020 Hb_187610_010--Hb_160953_010 Hb_187610_010--Hb_015036_010 Hb_121451_010 Hb_121451_010 Hb_006150_040--Hb_121451_010 Hb_006150_040--Hb_000172_170 Hb_006150_040--Hb_187610_010 Hb_002794_020 Hb_002794_020 Hb_006150_040--Hb_002794_020 Hb_003634_020--Hb_160953_010 Hb_003634_020--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_003634_020--Hb_001385_030 Hb_160953_010--Hb_015036_010 Hb_160953_010--Hb_001385_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0125554 0.0649361

CAGE analysis