Hb_006150_040

Information

Type -
Description -
Location Contig6150: 55375-57161
Sequence    

Annotation

kegg
ID mus:103995568
description uncharacterized protein LOC103995568 isoform X1
nr
ID XP_012448893.1
description PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006150_040 0.0 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
2 Hb_071517_010 0.0007751761 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
3 Hb_121451_010 0.0009369552 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_000005_200 0.001020614 - - -
5 Hb_000172_170 0.0012175123 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_187610_010 0.0013729246 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
7 Hb_002794_020 0.0016932015 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
8 Hb_003634_020 0.0017005876 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_001408_190 0.0017393645 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
10 Hb_166645_010 0.0018002698 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
11 Hb_160953_010 0.0018028026 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
12 Hb_008673_010 0.0020054607 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
13 Hb_012595_030 0.0023523375 - - -
14 Hb_015036_010 0.0023843723 - - -
15 Hb_001385_030 0.002384489 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
16 Hb_004346_020 0.0026884368 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171554_030 0.0026884368 - - -
18 Hb_011675_010 0.0027406048 - - -
19 Hb_032572_020 0.0028314922 - - -
20 Hb_002115_090 0.0028751913 - - PREDICTED: uncharacterized protein LOC104590556 [Nelumbo nucifera]

Gene co-expression network

sample Hb_006150_040 Hb_006150_040 Hb_071517_010 Hb_071517_010 Hb_006150_040--Hb_071517_010 Hb_121451_010 Hb_121451_010 Hb_006150_040--Hb_121451_010 Hb_000005_200 Hb_000005_200 Hb_006150_040--Hb_000005_200 Hb_000172_170 Hb_000172_170 Hb_006150_040--Hb_000172_170 Hb_187610_010 Hb_187610_010 Hb_006150_040--Hb_187610_010 Hb_002794_020 Hb_002794_020 Hb_006150_040--Hb_002794_020 Hb_071517_010--Hb_000005_200 Hb_071517_010--Hb_000172_170 Hb_071517_010--Hb_187610_010 Hb_003634_020 Hb_003634_020 Hb_071517_010--Hb_003634_020 Hb_160953_010 Hb_160953_010 Hb_071517_010--Hb_160953_010 Hb_121451_010--Hb_002794_020 Hb_001408_190 Hb_001408_190 Hb_121451_010--Hb_001408_190 Hb_166645_010 Hb_166645_010 Hb_121451_010--Hb_166645_010 Hb_008673_010 Hb_008673_010 Hb_121451_010--Hb_008673_010 Hb_012595_030 Hb_012595_030 Hb_121451_010--Hb_012595_030 Hb_000005_200--Hb_000172_170 Hb_000005_200--Hb_187610_010 Hb_000005_200--Hb_003634_020 Hb_000005_200--Hb_160953_010 Hb_000172_170--Hb_187610_010 Hb_000172_170--Hb_003634_020 Hb_000172_170--Hb_160953_010 Hb_015036_010 Hb_015036_010 Hb_000172_170--Hb_015036_010 Hb_187610_010--Hb_003634_020 Hb_187610_010--Hb_160953_010 Hb_187610_010--Hb_015036_010 Hb_002794_020--Hb_001408_190 Hb_002794_020--Hb_166645_010 Hb_002794_020--Hb_008673_010 Hb_002794_020--Hb_012595_030 Hb_004346_020 Hb_004346_020 Hb_002794_020--Hb_004346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0115246 0.0599011

CAGE analysis