Hb_160953_010

Information

Type -
Description -
Location Contig160953: 654-6057
Sequence    

Annotation

kegg
ID sot:102592947
description E3 ubiquitin protein ligase RIN2-like
nr
ID XP_009762955.1
description PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q0PPV6
description Putative uncharacterized protein OS=Phyllostachys edulis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160953_010 0.0 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
2 Hb_003634_020 0.0001022152 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
3 Hb_187610_010 0.000429879 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
4 Hb_015036_010 0.000581572 - - -
5 Hb_001385_030 0.0005816887 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
6 Hb_000172_170 0.0005852915 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
7 Hb_000005_200 0.0007821899 - - -
8 Hb_011675_010 0.0009378065 - - -
9 Hb_071517_010 0.0010276278 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
10 Hb_005411_010 0.0011737875 - - -
11 Hb_006150_040 0.0018028026 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
12 Hb_000552_050 0.0018942078 - - -
13 Hb_121451_010 0.0027397535 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_000692_050 0.0029295558 - - -
15 Hb_005976_100 0.0030420142 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
16 Hb_002794_020 0.0034959942 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
17 Hb_001408_190 0.0035421567 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
18 Hb_166645_010 0.0036030615 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
19 Hb_008673_010 0.0038082504 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
20 Hb_007426_020 0.0040399558 - - putative polyprotein [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_160953_010 Hb_160953_010 Hb_003634_020 Hb_003634_020 Hb_160953_010--Hb_003634_020 Hb_187610_010 Hb_187610_010 Hb_160953_010--Hb_187610_010 Hb_015036_010 Hb_015036_010 Hb_160953_010--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_160953_010--Hb_001385_030 Hb_000172_170 Hb_000172_170 Hb_160953_010--Hb_000172_170 Hb_000005_200 Hb_000005_200 Hb_160953_010--Hb_000005_200 Hb_003634_020--Hb_187610_010 Hb_003634_020--Hb_000172_170 Hb_003634_020--Hb_000005_200 Hb_003634_020--Hb_015036_010 Hb_003634_020--Hb_001385_030 Hb_187610_010--Hb_000172_170 Hb_187610_010--Hb_000005_200 Hb_071517_010 Hb_071517_010 Hb_187610_010--Hb_071517_010 Hb_187610_010--Hb_015036_010 Hb_015036_010--Hb_001385_030 Hb_011675_010 Hb_011675_010 Hb_015036_010--Hb_011675_010 Hb_005411_010 Hb_005411_010 Hb_015036_010--Hb_005411_010 Hb_001385_030--Hb_011675_010 Hb_001385_030--Hb_005411_010 Hb_001385_030--Hb_187610_010 Hb_000172_170--Hb_000005_200 Hb_000172_170--Hb_071517_010 Hb_000172_170--Hb_015036_010 Hb_000005_200--Hb_071517_010 Hb_006150_040 Hb_006150_040 Hb_000005_200--Hb_006150_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0139256 0.0715518

CAGE analysis