Hb_001385_030

Information

Type -
Description -
Location Contig1385: 22079-23845
Sequence    

Annotation

kegg
ID vvi:100852852
description uncharacterized LOC100852852
nr
ID XP_010657630.1
description PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H1S0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_030 0.0 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
2 Hb_015036_010 1.169e-07 - - -
3 Hb_011675_010 0.0003561179 - - -
4 Hb_160953_010 0.0005816887 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
5 Hb_005411_010 0.0005920991 - - -
6 Hb_003634_020 0.0006839039 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
7 Hb_187610_010 0.0010115675 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
8 Hb_000172_170 0.0011669798 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
9 Hb_000552_050 0.0013125204 - - -
10 Hb_000005_200 0.001363878 - - -
11 Hb_071517_010 0.0016093157 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
12 Hb_000692_050 0.0023478707 - - -
13 Hb_006150_040 0.002384489 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
14 Hb_005976_100 0.0024603295 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
15 Hb_121451_010 0.0033214373 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_007426_020 0.0034582745 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_002794_020 0.0040776752 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
18 Hb_001408_190 0.0041238375 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_166645_010 0.0041847421 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
20 Hb_008673_010 0.0043899301 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]

Gene co-expression network

sample Hb_001385_030 Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_001385_030--Hb_015036_010 Hb_011675_010 Hb_011675_010 Hb_001385_030--Hb_011675_010 Hb_160953_010 Hb_160953_010 Hb_001385_030--Hb_160953_010 Hb_005411_010 Hb_005411_010 Hb_001385_030--Hb_005411_010 Hb_003634_020 Hb_003634_020 Hb_001385_030--Hb_003634_020 Hb_187610_010 Hb_187610_010 Hb_001385_030--Hb_187610_010 Hb_015036_010--Hb_011675_010 Hb_015036_010--Hb_160953_010 Hb_015036_010--Hb_005411_010 Hb_015036_010--Hb_003634_020 Hb_015036_010--Hb_187610_010 Hb_011675_010--Hb_005411_010 Hb_011675_010--Hb_160953_010 Hb_000552_050 Hb_000552_050 Hb_011675_010--Hb_000552_050 Hb_011675_010--Hb_003634_020 Hb_160953_010--Hb_003634_020 Hb_160953_010--Hb_187610_010 Hb_000172_170 Hb_000172_170 Hb_160953_010--Hb_000172_170 Hb_000005_200 Hb_000005_200 Hb_160953_010--Hb_000005_200 Hb_005411_010--Hb_000552_050 Hb_005411_010--Hb_160953_010 Hb_005411_010--Hb_003634_020 Hb_003634_020--Hb_187610_010 Hb_003634_020--Hb_000172_170 Hb_003634_020--Hb_000005_200 Hb_187610_010--Hb_000172_170 Hb_187610_010--Hb_000005_200 Hb_071517_010 Hb_071517_010 Hb_187610_010--Hb_071517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0294073 0.15054

CAGE analysis