Hb_005411_010

Information

Type -
Description -
Location Contig5411: 1299-2537
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005411_010 0.0 - - -
2 Hb_011675_010 0.0002359813 - - -
3 Hb_001385_030 0.0005920991 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
4 Hb_015036_010 0.0005922158 - - -
5 Hb_000552_050 0.0007204218 - - -
6 Hb_160953_010 0.0011737875 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_003634_020 0.0012760026 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
8 Hb_187610_010 0.0016036657 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
9 Hb_000692_050 0.0017557739 - - -
10 Hb_000172_170 0.0017590778 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
11 Hb_005976_100 0.0018682328 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
12 Hb_000005_200 0.0019559757 - - -
13 Hb_071517_010 0.0022014129 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
14 Hb_007426_020 0.0028661807 - - putative polyprotein [Oryza sativa Japonica Group]
15 Hb_006150_040 0.0029765842 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
16 Hb_121451_010 0.0039135293 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_135866_010 0.0042271413 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
18 Hb_118840_040 0.0043858885 - - -
19 Hb_056867_010 0.0044662731 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_002794_020 0.0046697639 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005411_010 Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_005411_010--Hb_011675_010 Hb_001385_030 Hb_001385_030 Hb_005411_010--Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_005411_010--Hb_015036_010 Hb_000552_050 Hb_000552_050 Hb_005411_010--Hb_000552_050 Hb_160953_010 Hb_160953_010 Hb_005411_010--Hb_160953_010 Hb_003634_020 Hb_003634_020 Hb_005411_010--Hb_003634_020 Hb_011675_010--Hb_001385_030 Hb_011675_010--Hb_015036_010 Hb_011675_010--Hb_160953_010 Hb_011675_010--Hb_000552_050 Hb_011675_010--Hb_003634_020 Hb_001385_030--Hb_015036_010 Hb_001385_030--Hb_160953_010 Hb_001385_030--Hb_003634_020 Hb_187610_010 Hb_187610_010 Hb_001385_030--Hb_187610_010 Hb_015036_010--Hb_160953_010 Hb_015036_010--Hb_003634_020 Hb_015036_010--Hb_187610_010 Hb_000692_050 Hb_000692_050 Hb_000552_050--Hb_000692_050 Hb_005976_100 Hb_005976_100 Hb_000552_050--Hb_005976_100 Hb_000552_050--Hb_001385_030 Hb_000552_050--Hb_015036_010 Hb_160953_010--Hb_003634_020 Hb_160953_010--Hb_187610_010 Hb_000172_170 Hb_000172_170 Hb_160953_010--Hb_000172_170 Hb_000005_200 Hb_000005_200 Hb_160953_010--Hb_000005_200 Hb_003634_020--Hb_187610_010 Hb_003634_020--Hb_000172_170 Hb_003634_020--Hb_000005_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154973 0.0790344

CAGE analysis