Hb_187610_010

Information

Type -
Description -
Location Contig187610: 857-2290
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023432mg
description hypothetical protein
nr
ID XP_012466484.1
description PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187610_010 0.0 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
2 Hb_000172_170 0.0001554125 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
3 Hb_003634_020 0.0003276638 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
4 Hb_000005_200 0.000352311 - - -
5 Hb_160953_010 0.000429879 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
6 Hb_071517_010 0.0005977491 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
7 Hb_015036_010 0.0010114508 - - -
8 Hb_001385_030 0.0010115675 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
9 Hb_011675_010 0.001367685 - - -
10 Hb_006150_040 0.0013729246 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
11 Hb_005411_010 0.0016036657 - - -
12 Hb_121451_010 0.002309877 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_000552_050 0.0023240851 - - -
14 Hb_002794_020 0.0030661195 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
15 Hb_001408_190 0.0031122821 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_166645_010 0.0031731871 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
17 Hb_000692_050 0.0033594309 - - -
18 Hb_008673_010 0.0033783765 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
19 Hb_005976_100 0.003471889 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
20 Hb_012595_030 0.0037252508 - - -

Gene co-expression network

sample Hb_187610_010 Hb_187610_010 Hb_000172_170 Hb_000172_170 Hb_187610_010--Hb_000172_170 Hb_003634_020 Hb_003634_020 Hb_187610_010--Hb_003634_020 Hb_000005_200 Hb_000005_200 Hb_187610_010--Hb_000005_200 Hb_160953_010 Hb_160953_010 Hb_187610_010--Hb_160953_010 Hb_071517_010 Hb_071517_010 Hb_187610_010--Hb_071517_010 Hb_015036_010 Hb_015036_010 Hb_187610_010--Hb_015036_010 Hb_000172_170--Hb_000005_200 Hb_000172_170--Hb_071517_010 Hb_000172_170--Hb_003634_020 Hb_000172_170--Hb_160953_010 Hb_000172_170--Hb_015036_010 Hb_003634_020--Hb_160953_010 Hb_003634_020--Hb_000005_200 Hb_003634_020--Hb_015036_010 Hb_001385_030 Hb_001385_030 Hb_003634_020--Hb_001385_030 Hb_000005_200--Hb_071517_010 Hb_000005_200--Hb_160953_010 Hb_006150_040 Hb_006150_040 Hb_000005_200--Hb_006150_040 Hb_160953_010--Hb_015036_010 Hb_160953_010--Hb_001385_030 Hb_071517_010--Hb_006150_040 Hb_071517_010--Hb_003634_020 Hb_071517_010--Hb_160953_010 Hb_015036_010--Hb_001385_030 Hb_011675_010 Hb_011675_010 Hb_015036_010--Hb_011675_010 Hb_005411_010 Hb_005411_010 Hb_015036_010--Hb_005411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0133516 0.0687909

CAGE analysis