Hb_000552_050

Information

Type -
Description -
Location Contig552: 33376-37141
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000552_050 0.0 - - -
2 Hb_005411_010 0.0007204218 - - -
3 Hb_011675_010 0.0009564029 - - -
4 Hb_000692_050 0.0010353532 - - -
5 Hb_005976_100 0.0011478124 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
6 Hb_001385_030 0.0013125204 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
7 Hb_015036_010 0.0013126371 - - -
8 Hb_160953_010 0.0018942078 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
9 Hb_003634_020 0.0019964227 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
10 Hb_007426_020 0.002145763 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_187610_010 0.0023240851 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
12 Hb_000172_170 0.0024794967 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
13 Hb_000005_200 0.002676394 - - -
14 Hb_071517_010 0.0029218304 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
15 Hb_135866_010 0.0035067292 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
16 Hb_118840_040 0.0036654772 - - -
17 Hb_006150_040 0.0036969987 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
18 Hb_056867_010 0.0037458622 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
19 Hb_121451_010 0.004633939 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
20 Hb_047387_010 0.0047733765 - - -

Gene co-expression network

sample Hb_000552_050 Hb_000552_050 Hb_005411_010 Hb_005411_010 Hb_000552_050--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_000552_050--Hb_011675_010 Hb_000692_050 Hb_000692_050 Hb_000552_050--Hb_000692_050 Hb_005976_100 Hb_005976_100 Hb_000552_050--Hb_005976_100 Hb_001385_030 Hb_001385_030 Hb_000552_050--Hb_001385_030 Hb_015036_010 Hb_015036_010 Hb_000552_050--Hb_015036_010 Hb_005411_010--Hb_011675_010 Hb_005411_010--Hb_001385_030 Hb_005411_010--Hb_015036_010 Hb_160953_010 Hb_160953_010 Hb_005411_010--Hb_160953_010 Hb_003634_020 Hb_003634_020 Hb_005411_010--Hb_003634_020 Hb_011675_010--Hb_001385_030 Hb_011675_010--Hb_015036_010 Hb_011675_010--Hb_160953_010 Hb_011675_010--Hb_003634_020 Hb_000692_050--Hb_005976_100 Hb_007426_020 Hb_007426_020 Hb_000692_050--Hb_007426_020 Hb_000692_050--Hb_005411_010 Hb_000692_050--Hb_011675_010 Hb_000692_050--Hb_001385_030 Hb_005976_100--Hb_007426_020 Hb_005976_100--Hb_005411_010 Hb_005976_100--Hb_011675_010 Hb_135866_010 Hb_135866_010 Hb_005976_100--Hb_135866_010 Hb_001385_030--Hb_015036_010 Hb_001385_030--Hb_160953_010 Hb_001385_030--Hb_003634_020 Hb_187610_010 Hb_187610_010 Hb_001385_030--Hb_187610_010 Hb_015036_010--Hb_160953_010 Hb_015036_010--Hb_003634_020 Hb_015036_010--Hb_187610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0164669 0.0835956

CAGE analysis