Hb_135866_010

Information

Type -
Description -
Location Contig135866: 53-907
Sequence    

Annotation

kegg
ID mus:103995568
description uncharacterized protein LOC103995568 isoform X1
nr
ID XP_012458064.1
description PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135866_010 0.0 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
2 Hb_118840_040 0.0001587499 - - -
3 Hb_056867_010 0.0002391359 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
4 Hb_047387_010 0.0012666663 - - -
5 Hb_001221_420 0.0013585224 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
6 Hb_007426_020 0.0013609755 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_005976_100 0.0023589253 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
8 Hb_000692_050 0.0024713841 - - -
9 Hb_000552_050 0.0035067292 - - -
10 Hb_005411_010 0.0042271413 - - -
11 Hb_100500_010 0.0042577818 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
12 Hb_011675_010 0.0044631185 - - -
13 Hb_001385_030 0.0048192294 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
14 Hb_015036_010 0.0048193461 - - -
15 Hb_047399_010 0.0050384789 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
16 Hb_160953_010 0.0054009043 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
17 Hb_003634_020 0.0055031168 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
18 Hb_187610_010 0.0058307709 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
19 Hb_000573_080 0.0058807583 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
20 Hb_000172_170 0.0059861784 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_135866_010 Hb_135866_010 Hb_118840_040 Hb_118840_040 Hb_135866_010--Hb_118840_040 Hb_056867_010 Hb_056867_010 Hb_135866_010--Hb_056867_010 Hb_047387_010 Hb_047387_010 Hb_135866_010--Hb_047387_010 Hb_001221_420 Hb_001221_420 Hb_135866_010--Hb_001221_420 Hb_007426_020 Hb_007426_020 Hb_135866_010--Hb_007426_020 Hb_005976_100 Hb_005976_100 Hb_135866_010--Hb_005976_100 Hb_118840_040--Hb_056867_010 Hb_118840_040--Hb_047387_010 Hb_118840_040--Hb_001221_420 Hb_118840_040--Hb_007426_020 Hb_118840_040--Hb_005976_100 Hb_056867_010--Hb_047387_010 Hb_056867_010--Hb_001221_420 Hb_056867_010--Hb_007426_020 Hb_056867_010--Hb_005976_100 Hb_047387_010--Hb_001221_420 Hb_047387_010--Hb_007426_020 Hb_100500_010 Hb_100500_010 Hb_047387_010--Hb_100500_010 Hb_001221_420--Hb_007426_020 Hb_001221_420--Hb_100500_010 Hb_007426_020--Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_007426_020--Hb_000692_050 Hb_000552_050 Hb_000552_050 Hb_007426_020--Hb_000552_050 Hb_005976_100--Hb_000692_050 Hb_005976_100--Hb_000552_050 Hb_005411_010 Hb_005411_010 Hb_005976_100--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_005976_100--Hb_011675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0212258 0.10539

CAGE analysis