Hb_056867_010

Information

Type -
Description -
Location Contig56867: 2-874
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID XP_012468708.1
description PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056867_010 0.0 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
2 Hb_118840_040 8.0386e-05 - - -
3 Hb_135866_010 0.0002391359 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
4 Hb_047387_010 0.0010275307 - - -
5 Hb_001221_420 0.0011193869 - - Uncharacterized protein TCM_032186 [Theobroma cacao]
6 Hb_007426_020 0.0016001109 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_005976_100 0.0025980599 desease resistance Gene Name: NB-ARC hypothetical protein RCOM_1408460 [Ricinus communis]
8 Hb_000692_050 0.0027105185 - - -
9 Hb_000552_050 0.0037458622 - - -
10 Hb_100500_010 0.0040186496 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
11 Hb_005411_010 0.0044662731 - - -
12 Hb_011675_010 0.0047022498 - - -
13 Hb_047399_010 0.0047993482 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH2 [Manihot esculenta]
14 Hb_001385_030 0.00505836 - - PREDICTED: uncharacterized protein LOC100852852 [Vitis vinifera]
15 Hb_015036_010 0.0050584768 - - -
16 Hb_160953_010 0.0056400336 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
17 Hb_000573_080 0.0056416295 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
18 Hb_003634_020 0.0057422458 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
19 Hb_004048_040 0.0059875521 - - -
20 Hb_187610_010 0.0060698992 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]

Gene co-expression network

sample Hb_056867_010 Hb_056867_010 Hb_118840_040 Hb_118840_040 Hb_056867_010--Hb_118840_040 Hb_135866_010 Hb_135866_010 Hb_056867_010--Hb_135866_010 Hb_047387_010 Hb_047387_010 Hb_056867_010--Hb_047387_010 Hb_001221_420 Hb_001221_420 Hb_056867_010--Hb_001221_420 Hb_007426_020 Hb_007426_020 Hb_056867_010--Hb_007426_020 Hb_005976_100 Hb_005976_100 Hb_056867_010--Hb_005976_100 Hb_118840_040--Hb_135866_010 Hb_118840_040--Hb_047387_010 Hb_118840_040--Hb_001221_420 Hb_118840_040--Hb_007426_020 Hb_118840_040--Hb_005976_100 Hb_135866_010--Hb_047387_010 Hb_135866_010--Hb_001221_420 Hb_135866_010--Hb_007426_020 Hb_135866_010--Hb_005976_100 Hb_047387_010--Hb_001221_420 Hb_047387_010--Hb_007426_020 Hb_100500_010 Hb_100500_010 Hb_047387_010--Hb_100500_010 Hb_001221_420--Hb_007426_020 Hb_001221_420--Hb_100500_010 Hb_007426_020--Hb_005976_100 Hb_000692_050 Hb_000692_050 Hb_007426_020--Hb_000692_050 Hb_000552_050 Hb_000552_050 Hb_007426_020--Hb_000552_050 Hb_005976_100--Hb_000692_050 Hb_005976_100--Hb_000552_050 Hb_005411_010 Hb_005411_010 Hb_005976_100--Hb_005411_010 Hb_011675_010 Hb_011675_010 Hb_005976_100--Hb_011675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0215517 0.106847

CAGE analysis