Hb_008673_010

Information

Type -
Description -
Location Contig8673: 32564-34800
Sequence    

Annotation

kegg
ID vvi:104879858
description uncharacterized LOC104879858
nr
ID XP_010652563.1
description PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BXK2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022914 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008673_010 0.0 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
2 Hb_166645_010 0.0002051915 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
3 Hb_001408_190 0.0002660971 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
4 Hb_002794_020 0.0003122601 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
5 Hb_012595_030 0.0003468784 - - -
6 Hb_004346_020 0.0006829797 - - conserved hypothetical protein [Ricinus communis]
7 Hb_171554_030 0.0006829797 - - -
8 Hb_032572_020 0.000826036 - - -
9 Hb_002115_090 0.0008697354 - - PREDICTED: uncharacterized protein LOC104590556 [Nelumbo nucifera]
10 Hb_121451_010 0.0010685074 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_001770_030 0.0019895271 - - hypothetical protein B456_010G041100, partial [Gossypium raimondii]
12 Hb_006150_040 0.0020054607 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
13 Hb_005617_050 0.002253163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
14 Hb_001579_120 0.0024198512 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_071517_010 0.0027806327 - - hypothetical protein CICLE_v10010288mg, partial [Citrus clementina]
16 Hb_015337_010 0.0027857253 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_013781_010 0.0028205967 - - hypothetical protein VITISV_030726 [Vitis vinifera]
18 Hb_000005_200 0.0030260689 - - -
19 Hb_000172_170 0.0032229656 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
20 Hb_007332_010 0.0032629676 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_008673_010 Hb_008673_010 Hb_166645_010 Hb_166645_010 Hb_008673_010--Hb_166645_010 Hb_001408_190 Hb_001408_190 Hb_008673_010--Hb_001408_190 Hb_002794_020 Hb_002794_020 Hb_008673_010--Hb_002794_020 Hb_012595_030 Hb_012595_030 Hb_008673_010--Hb_012595_030 Hb_004346_020 Hb_004346_020 Hb_008673_010--Hb_004346_020 Hb_171554_030 Hb_171554_030 Hb_008673_010--Hb_171554_030 Hb_166645_010--Hb_001408_190 Hb_166645_010--Hb_002794_020 Hb_166645_010--Hb_012595_030 Hb_121451_010 Hb_121451_010 Hb_166645_010--Hb_121451_010 Hb_166645_010--Hb_004346_020 Hb_001408_190--Hb_002794_020 Hb_001408_190--Hb_012595_030 Hb_001408_190--Hb_121451_010 Hb_001408_190--Hb_004346_020 Hb_002794_020--Hb_012595_030 Hb_002794_020--Hb_121451_010 Hb_002794_020--Hb_004346_020 Hb_012595_030--Hb_004346_020 Hb_012595_030--Hb_171554_030 Hb_032572_020 Hb_032572_020 Hb_012595_030--Hb_032572_020 Hb_002115_090 Hb_002115_090 Hb_012595_030--Hb_002115_090 Hb_004346_020--Hb_171554_030 Hb_004346_020--Hb_032572_020 Hb_004346_020--Hb_002115_090 Hb_004346_020--Hb_171554_030 Hb_004346_020--Hb_032572_020 Hb_004346_020--Hb_002115_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00887658 0.046735

CAGE analysis