Hb_171554_030

Information

Type -
Description -
Location Contig171554: 39133-39558
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004346_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171554_030 0.0 - - -
3 Hb_032572_020 0.0001430564 - - -
4 Hb_002115_090 0.0001867558 - - PREDICTED: uncharacterized protein LOC104590556 [Nelumbo nucifera]
5 Hb_012595_030 0.0003361013 - - -
6 Hb_008673_010 0.0006829797 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
7 Hb_166645_010 0.0008881711 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105123834 [Populus euphratica]
8 Hb_001408_190 0.0009490766 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_002794_020 0.0009952396 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
10 Hb_001770_030 0.0013065492 - - hypothetical protein B456_010G041100, partial [Gossypium raimondii]
11 Hb_005617_050 0.0015701857 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105167812 [Sesamum indicum]
12 Hb_001579_120 0.0017368743 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_121451_010 0.0017514858 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
14 Hb_015337_010 0.0021027495 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_013781_010 0.0021376209 - - hypothetical protein VITISV_030726 [Vitis vinifera]
16 Hb_007332_010 0.0025799934 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_006150_040 0.0026884368 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
18 Hb_033123_010 0.0028605488 - - Putative polyprotein [Oryza sativa Japonica Group]
19 Hb_010051_010 0.0029095178 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001446_050 0.0029351554 - - putative polyprotein [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_004346_020 Hb_004346_020 Hb_171554_030 Hb_171554_030 Hb_004346_020--Hb_171554_030 Hb_032572_020 Hb_032572_020 Hb_004346_020--Hb_032572_020 Hb_002115_090 Hb_002115_090 Hb_004346_020--Hb_002115_090 Hb_012595_030 Hb_012595_030 Hb_004346_020--Hb_012595_030 Hb_008673_010 Hb_008673_010 Hb_004346_020--Hb_008673_010 Hb_166645_010 Hb_166645_010 Hb_004346_020--Hb_166645_010 Hb_004346_020--Hb_171554_030 Hb_004346_020--Hb_032572_020 Hb_004346_020--Hb_002115_090 Hb_004346_020--Hb_012595_030 Hb_004346_020--Hb_008673_010 Hb_004346_020--Hb_166645_010 Hb_032572_020--Hb_002115_090 Hb_032572_020--Hb_171554_030 Hb_032572_020--Hb_012595_030 Hb_032572_020--Hb_008673_010 Hb_032572_020--Hb_166645_010 Hb_002115_090--Hb_171554_030 Hb_002115_090--Hb_012595_030 Hb_002115_090--Hb_008673_010 Hb_002115_090--Hb_166645_010 Hb_012595_030--Hb_171554_030 Hb_012595_030--Hb_008673_010 Hb_012595_030--Hb_166645_010 Hb_008673_010--Hb_166645_010 Hb_001408_190 Hb_001408_190 Hb_008673_010--Hb_001408_190 Hb_002794_020 Hb_002794_020 Hb_008673_010--Hb_002794_020 Hb_008673_010--Hb_171554_030 Hb_166645_010--Hb_001408_190 Hb_166645_010--Hb_002794_020 Hb_121451_010 Hb_121451_010 Hb_166645_010--Hb_121451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.338225 1.78859

CAGE analysis