Hb_027969_010

Information

Type -
Description -
Location Contig27969: 323-2079
Sequence    

Annotation

kegg
ID rcu:RCOM_1264730
description hypothetical protein
nr
ID KDP40557.1
description hypothetical protein JCGZ_24556 [Jatropha curcas]
swissprot
ID Q8IV48
description 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
trembl
ID A0A067KWL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027969_010 0.0 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
2 Hb_000029_220 0.0645543972 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
3 Hb_005676_020 0.0747484334 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
4 Hb_024248_010 0.1024909675 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
5 Hb_004113_030 0.1198755446 - - -
6 Hb_116701_030 0.1264086843 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
7 Hb_001401_030 0.1281996831 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
8 Hb_020956_050 0.1409282361 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
9 Hb_008021_030 0.1409347556 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_001140_310 0.1409500524 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
11 Hb_004528_030 0.1409501346 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_135174_010 0.1409506128 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
13 Hb_003653_040 0.1411129292 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
14 Hb_001148_010 0.1413092392 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_001192_020 0.1414524056 - - -
16 Hb_003370_040 0.1416086325 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
17 Hb_000088_280 0.1421003513 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
18 Hb_187301_010 0.1425835917 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
19 Hb_011540_050 0.1426284436 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_025654_010 0.1428681043 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_027969_010 Hb_027969_010 Hb_000029_220 Hb_000029_220 Hb_027969_010--Hb_000029_220 Hb_005676_020 Hb_005676_020 Hb_027969_010--Hb_005676_020 Hb_024248_010 Hb_024248_010 Hb_027969_010--Hb_024248_010 Hb_004113_030 Hb_004113_030 Hb_027969_010--Hb_004113_030 Hb_116701_030 Hb_116701_030 Hb_027969_010--Hb_116701_030 Hb_001401_030 Hb_001401_030 Hb_027969_010--Hb_001401_030 Hb_000029_220--Hb_024248_010 Hb_000029_220--Hb_005676_020 Hb_001452_150 Hb_001452_150 Hb_000029_220--Hb_001452_150 Hb_009826_010 Hb_009826_010 Hb_000029_220--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_000029_220--Hb_004274_010 Hb_005676_020--Hb_024248_010 Hb_005676_020--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_005676_020--Hb_000907_050 Hb_062192_050 Hb_062192_050 Hb_005676_020--Hb_062192_050 Hb_024248_010--Hb_001401_030 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_024248_010--Hb_001452_150 Hb_002294_020 Hb_002294_020 Hb_004113_030--Hb_002294_020 Hb_000043_060 Hb_000043_060 Hb_004113_030--Hb_000043_060 Hb_001681_010 Hb_001681_010 Hb_004113_030--Hb_001681_010 Hb_004466_080 Hb_004466_080 Hb_004113_030--Hb_004466_080 Hb_184398_010 Hb_184398_010 Hb_004113_030--Hb_184398_010 Hb_025654_010 Hb_025654_010 Hb_004113_030--Hb_025654_010 Hb_116701_030--Hb_000029_220 Hb_000914_010 Hb_000914_010 Hb_116701_030--Hb_000914_010 Hb_051410_010 Hb_051410_010 Hb_116701_030--Hb_051410_010 Hb_116701_030--Hb_005676_020 Hb_116701_030--Hb_024248_010 Hb_001401_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_001401_030--Hb_003772_010 Hb_001401_030--Hb_062192_050 Hb_001401_030--Hb_009826_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0873145 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0193706 0.388034

CAGE analysis