Hb_062192_050

Information

Type -
Description -
Location Contig62192: 29281-32786
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062192_050 0.0 - - -
2 Hb_057716_010 0.0677676657 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_001401_030 0.0898551223 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
4 Hb_000907_050 0.0940027972 - - -
5 Hb_003772_010 0.1049058613 - - polyprotein [Oryza australiensis]
6 Hb_024248_010 0.1093644336 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
7 Hb_005676_020 0.118074634 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
8 Hb_007533_050 0.1223571222 - - -
9 Hb_001856_290 0.141783651 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
10 Hb_009826_010 0.1449197635 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_003427_040 0.1482561521 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
12 Hb_026188_010 0.1509934828 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
13 Hb_001999_330 0.1539745149 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
14 Hb_032016_010 0.1553692334 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
15 Hb_001452_150 0.1561228799 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
16 Hb_094484_010 0.1576254611 - - kinase, putative [Ricinus communis]
17 Hb_000029_220 0.1588099991 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
18 Hb_003462_170 0.1592650444 - - unnamed protein product [Vitis vinifera]
19 Hb_030987_010 0.1595993899 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_010964_030 0.1600126739 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]

Gene co-expression network

sample Hb_062192_050 Hb_062192_050 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_001401_030 Hb_001401_030 Hb_062192_050--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_062192_050--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_062192_050--Hb_003772_010 Hb_024248_010 Hb_024248_010 Hb_062192_050--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_062192_050--Hb_005676_020 Hb_001856_290 Hb_001856_290 Hb_057716_010--Hb_001856_290 Hb_052139_010 Hb_052139_010 Hb_057716_010--Hb_052139_010 Hb_007533_050 Hb_007533_050 Hb_057716_010--Hb_007533_050 Hb_031194_020 Hb_031194_020 Hb_057716_010--Hb_031194_020 Hb_026188_010 Hb_026188_010 Hb_057716_010--Hb_026188_010 Hb_001401_030--Hb_024248_010 Hb_001401_030--Hb_005676_020 Hb_001401_030--Hb_000907_050 Hb_001401_030--Hb_003772_010 Hb_009826_010 Hb_009826_010 Hb_001401_030--Hb_009826_010 Hb_000907_050--Hb_003772_010 Hb_000907_050--Hb_024248_010 Hb_030987_010 Hb_030987_010 Hb_000907_050--Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_000907_050--Hb_010964_030 Hb_003772_010--Hb_030987_010 Hb_003772_010--Hb_024248_010 Hb_003772_010--Hb_005676_020 Hb_024248_010--Hb_005676_020 Hb_000029_220 Hb_000029_220 Hb_024248_010--Hb_000029_220 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_027969_010 Hb_027969_010 Hb_005676_020--Hb_027969_010 Hb_005676_020--Hb_000029_220 Hb_005676_020--Hb_000907_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00866299 0.0421126 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498939 0.482923

CAGE analysis