Hb_000907_050

Information

Type -
Description -
Location Contig907: 39099-44048
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_050 0.0 - - -
2 Hb_003772_010 0.0576181992 - - polyprotein [Oryza australiensis]
3 Hb_001401_030 0.0591662007 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
4 Hb_024248_010 0.0904467526 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
5 Hb_062192_050 0.0940027972 - - -
6 Hb_030987_010 0.0982631786 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_010964_030 0.0988506826 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
8 Hb_005676_020 0.1159027162 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
9 Hb_009826_010 0.117924078 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003427_040 0.1211799243 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_001452_150 0.1325488885 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
12 Hb_057716_010 0.1478646897 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_004274_010 0.1509630392 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
14 Hb_000811_090 0.1560807257 - - hypothetical protein VITISV_043745 [Vitis vinifera]
15 Hb_000029_220 0.1572728575 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
16 Hb_049285_010 0.1572857548 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_007533_050 0.1624925154 - - -
18 Hb_001981_020 0.1625025026 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
19 Hb_000465_010 0.1773454569 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
20 Hb_154188_010 0.1774027534 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000907_050 Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_000907_050--Hb_003772_010 Hb_001401_030 Hb_001401_030 Hb_000907_050--Hb_001401_030 Hb_024248_010 Hb_024248_010 Hb_000907_050--Hb_024248_010 Hb_062192_050 Hb_062192_050 Hb_000907_050--Hb_062192_050 Hb_030987_010 Hb_030987_010 Hb_000907_050--Hb_030987_010 Hb_010964_030 Hb_010964_030 Hb_000907_050--Hb_010964_030 Hb_003772_010--Hb_001401_030 Hb_003772_010--Hb_062192_050 Hb_003772_010--Hb_030987_010 Hb_003772_010--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_003772_010--Hb_005676_020 Hb_001401_030--Hb_024248_010 Hb_001401_030--Hb_005676_020 Hb_001401_030--Hb_062192_050 Hb_009826_010 Hb_009826_010 Hb_001401_030--Hb_009826_010 Hb_024248_010--Hb_005676_020 Hb_000029_220 Hb_000029_220 Hb_024248_010--Hb_000029_220 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_062192_050--Hb_024248_010 Hb_062192_050--Hb_005676_020 Hb_030987_010--Hb_010964_030 Hb_098361_010 Hb_098361_010 Hb_030987_010--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_030987_010--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_030987_010--Hb_007668_030 Hb_010964_030--Hb_003772_010 Hb_001981_020 Hb_001981_020 Hb_010964_030--Hb_001981_020 Hb_186580_020 Hb_186580_020 Hb_010964_030--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_010964_030--Hb_027970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0207614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0371464 0.280084

CAGE analysis