Hb_024248_010

Information

Type -
Description -
Location Contig24248: 2336-2878
Sequence    

Annotation

kegg
ID pda:103699620
description uncharacterized LOC103699620
nr
ID XP_012458211.1
description PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0N6X1
description Zinc finger CCHC domain-containing 8 OS=Gossypium arboreum GN=F383_35550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024248_010 0.0 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
2 Hb_001401_030 0.0467726261 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
3 Hb_005676_020 0.0540864567 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
4 Hb_000029_220 0.0683339822 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
5 Hb_009826_010 0.0720596566 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_003427_040 0.0767782199 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_001452_150 0.0816693071 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
8 Hb_000907_050 0.0904467526 - - -
9 Hb_004274_010 0.097622525 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
10 Hb_027969_010 0.1024909675 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
11 Hb_062192_050 0.1093644336 - - -
12 Hb_003772_010 0.1258671128 - - polyprotein [Oryza australiensis]
13 Hb_094484_010 0.1628441301 - - kinase, putative [Ricinus communis]
14 Hb_057716_010 0.1635959008 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_010964_030 0.1703838049 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
16 Hb_000811_090 0.1762874039 - - hypothetical protein VITISV_043745 [Vitis vinifera]
17 Hb_030987_010 0.1783847732 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004113_030 0.1792314855 - - -
19 Hb_116701_030 0.1793733723 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
20 Hb_011476_010 0.1794074117 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_024248_010 Hb_024248_010 Hb_001401_030 Hb_001401_030 Hb_024248_010--Hb_001401_030 Hb_005676_020 Hb_005676_020 Hb_024248_010--Hb_005676_020 Hb_000029_220 Hb_000029_220 Hb_024248_010--Hb_000029_220 Hb_009826_010 Hb_009826_010 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_001452_150 Hb_001452_150 Hb_024248_010--Hb_001452_150 Hb_001401_030--Hb_005676_020 Hb_000907_050 Hb_000907_050 Hb_001401_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_001401_030--Hb_003772_010 Hb_062192_050 Hb_062192_050 Hb_001401_030--Hb_062192_050 Hb_001401_030--Hb_009826_010 Hb_027969_010 Hb_027969_010 Hb_005676_020--Hb_027969_010 Hb_005676_020--Hb_000029_220 Hb_005676_020--Hb_000907_050 Hb_005676_020--Hb_062192_050 Hb_000029_220--Hb_027969_010 Hb_000029_220--Hb_001452_150 Hb_000029_220--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_000029_220--Hb_004274_010 Hb_009826_010--Hb_003427_040 Hb_009826_010--Hb_001452_150 Hb_009826_010--Hb_004274_010 Hb_003427_040--Hb_001452_150 Hb_003427_040--Hb_004274_010 Hb_003427_040--Hb_000029_220 Hb_011476_010 Hb_011476_010 Hb_003427_040--Hb_011476_010 Hb_001452_150--Hb_004274_010 Hb_001452_150--Hb_011476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0529571 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0381442 0.351394

CAGE analysis