Hb_051410_010

Information

Type -
Description -
Location Contig51410: 28-761
Sequence    

Annotation

kegg
ID mdm:103401813
description uncharacterized LOC103401813
nr
ID XP_008338751.1
description PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
swissprot
ID -
description -
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051410_010 0.0 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
2 Hb_000914_010 0.0112624217 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
3 Hb_000649_090 0.0652956942 - - unnamed protein product [Vitis vinifera]
4 Hb_011476_010 0.1100131239 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_004274_010 0.1262257916 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
6 Hb_014102_010 0.1320176765 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000946_130 0.1339915481 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
8 Hb_010721_040 0.134024375 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
9 Hb_003688_120 0.1394817612 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
10 Hb_000806_010 0.1418814509 - - PREDICTED: hevamine-A-like [Jatropha curcas]
11 Hb_001452_150 0.1428439883 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
12 Hb_000029_220 0.1433233826 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
13 Hb_004530_010 0.1502424489 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
14 Hb_003427_040 0.155124064 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
15 Hb_009826_010 0.1570634989 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_003186_050 0.1621708575 - - -
17 Hb_001248_140 0.1630453589 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_116701_030 0.1668447376 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
19 Hb_044380_010 0.1723994112 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
20 Hb_167457_010 0.1724694521 - - hypothetical protein glysoja_045622, partial [Glycine soja]

Gene co-expression network

sample Hb_051410_010 Hb_051410_010 Hb_000914_010 Hb_000914_010 Hb_051410_010--Hb_000914_010 Hb_000649_090 Hb_000649_090 Hb_051410_010--Hb_000649_090 Hb_011476_010 Hb_011476_010 Hb_051410_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_051410_010--Hb_004274_010 Hb_014102_010 Hb_014102_010 Hb_051410_010--Hb_014102_010 Hb_000946_130 Hb_000946_130 Hb_051410_010--Hb_000946_130 Hb_000914_010--Hb_000649_090 Hb_000914_010--Hb_011476_010 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000029_220 Hb_000029_220 Hb_000914_010--Hb_000029_220 Hb_000649_090--Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_000649_090--Hb_003688_120 Hb_000806_010 Hb_000806_010 Hb_000649_090--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_000649_090--Hb_169960_010 Hb_003186_050 Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_011476_010--Hb_167457_010 Hb_011476_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_011476_010--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_011476_010--Hb_003427_040 Hb_004274_010--Hb_001452_150 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_014102_010--Hb_003688_120 Hb_014102_010--Hb_000806_010 Hb_005207_040 Hb_005207_040 Hb_014102_010--Hb_005207_040 Hb_014102_010--Hb_169960_010 Hb_002559_020 Hb_002559_020 Hb_014102_010--Hb_002559_020 Hb_165396_010 Hb_165396_010 Hb_000946_130--Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_000946_130--Hb_002542_050 Hb_000946_130--Hb_011476_010 Hb_000946_130--Hb_003186_050 Hb_002157_060 Hb_002157_060 Hb_000946_130--Hb_002157_060 Hb_000946_130--Hb_167457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.114684 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0483865 0.237004

CAGE analysis