Hb_002542_050

Information

Type -
Description -
Location Contig2542: 71409-74141
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_050 0.0 - - -
2 Hb_165396_010 0.0045965315 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_002157_060 0.0649051695 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
4 Hb_002042_040 0.0649660054 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
5 Hb_000946_130 0.0860938714 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
6 Hb_104835_010 0.1273348995 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
7 Hb_003186_050 0.1726919069 - - -
8 Hb_167457_010 0.1742998099 - - hypothetical protein glysoja_045622, partial [Glycine soja]
9 Hb_003450_010 0.1750006433 - - -
10 Hb_000009_430 0.1755913925 - - conserved hypothetical protein [Ricinus communis]
11 Hb_169960_010 0.177828056 - - -
12 Hb_011476_010 0.1795230925 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_016835_020 0.1872922003 - - unnamed protein product [Coffea canephora]
14 Hb_000117_150 0.2009303939 - - hypothetical protein RCOM_0079810 [Ricinus communis]
15 Hb_003858_080 0.2058798865 - - Germin-like protein 2 [Theobroma cacao]
16 Hb_000649_090 0.2106499634 - - unnamed protein product [Vitis vinifera]
17 Hb_000014_200 0.2107233797 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
18 Hb_001248_140 0.2180286673 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_051410_010 0.2181970711 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
20 Hb_003983_010 0.2221373973 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002542_050 Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_002542_050--Hb_165396_010 Hb_002157_060 Hb_002157_060 Hb_002542_050--Hb_002157_060 Hb_002042_040 Hb_002042_040 Hb_002542_050--Hb_002042_040 Hb_000946_130 Hb_000946_130 Hb_002542_050--Hb_000946_130 Hb_104835_010 Hb_104835_010 Hb_002542_050--Hb_104835_010 Hb_003186_050 Hb_003186_050 Hb_002542_050--Hb_003186_050 Hb_165396_010--Hb_002157_060 Hb_165396_010--Hb_002042_040 Hb_165396_010--Hb_000946_130 Hb_165396_010--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_165396_010--Hb_169960_010 Hb_002157_060--Hb_002042_040 Hb_002157_060--Hb_000946_130 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_002042_040--Hb_000946_130 Hb_002042_040--Hb_104835_010 Hb_002042_040--Hb_169960_010 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_000946_130--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_104835_010--Hb_002157_060 Hb_000009_430 Hb_000009_430 Hb_104835_010--Hb_000009_430 Hb_002965_130 Hb_002965_130 Hb_104835_010--Hb_002965_130 Hb_003186_050--Hb_167457_010 Hb_003186_050--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_003186_050--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_003186_050--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_003186_050--Hb_003427_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0766859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0859137 0.10652

CAGE analysis