Hb_002042_040

Information

Type -
Description -
Location Contig2042: 51766-51984
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02440g
description hypothetical protein
nr
ID XP_006375765.1
description hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWA4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_040 0.0 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
2 Hb_002157_060 0.0176536864 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
3 Hb_165396_010 0.0637862407 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_002542_050 0.0649660054 - - -
5 Hb_000946_130 0.1371778707 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
6 Hb_104835_010 0.150952097 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
7 Hb_169960_010 0.1666451533 - - -
8 Hb_000009_430 0.1717562353 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000014_200 0.175784544 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
10 Hb_003858_080 0.1978131536 - - Germin-like protein 2 [Theobroma cacao]
11 Hb_003983_010 0.2013565362 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
12 Hb_000138_080 0.2038123279 - - conserved hypothetical protein [Ricinus communis]
13 Hb_159809_080 0.207514502 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_003450_010 0.2109367384 - - -
15 Hb_179138_010 0.2116140968 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_011849_020 0.2121066416 - - dioxygenase family protein [Populus trichocarpa]
17 Hb_000117_150 0.2262231374 - - hypothetical protein RCOM_0079810 [Ricinus communis]
18 Hb_000300_650 0.2302470866 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
19 Hb_016835_020 0.2312861346 - - unnamed protein product [Coffea canephora]
20 Hb_003186_050 0.2363146645 - - -

Gene co-expression network

sample Hb_002042_040 Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_002042_040--Hb_002157_060 Hb_165396_010 Hb_165396_010 Hb_002042_040--Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_002042_040--Hb_002542_050 Hb_000946_130 Hb_000946_130 Hb_002042_040--Hb_000946_130 Hb_104835_010 Hb_104835_010 Hb_002042_040--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_002042_040--Hb_169960_010 Hb_002157_060--Hb_165396_010 Hb_002157_060--Hb_002542_050 Hb_002157_060--Hb_000946_130 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_165396_010--Hb_002542_050 Hb_165396_010--Hb_000946_130 Hb_165396_010--Hb_104835_010 Hb_165396_010--Hb_169960_010 Hb_002542_050--Hb_000946_130 Hb_002542_050--Hb_104835_010 Hb_003186_050 Hb_003186_050 Hb_002542_050--Hb_003186_050 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_000946_130--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_104835_010--Hb_002157_060 Hb_000009_430 Hb_000009_430 Hb_104835_010--Hb_000009_430 Hb_002965_130 Hb_002965_130 Hb_104835_010--Hb_002965_130 Hb_169960_010--Hb_000014_200 Hb_005207_040 Hb_005207_040 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_001144_030 Hb_001144_030 Hb_169960_010--Hb_001144_030 Hb_002559_020 Hb_002559_020 Hb_169960_010--Hb_002559_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.01165 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.00253 2.90712

CAGE analysis