Hb_000009_430

Information

Type -
Description -
Location Contig9: 446592-450083
Sequence    

Annotation

kegg
ID rcu:RCOM_0604200
description hypothetical protein
nr
ID XP_002522390.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID F6I226
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_430 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000751_060 0.1240469508 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
3 Hb_007676_060 0.1427852296 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
4 Hb_000120_880 0.1495543568 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
5 Hb_000254_060 0.1498889357 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011849_020 0.1506420328 - - dioxygenase family protein [Populus trichocarpa]
7 Hb_000982_120 0.1527046915 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
8 Hb_001622_020 0.1553763249 - - -
9 Hb_146930_010 0.1591775485 - - -
10 Hb_001597_090 0.162375551 - - -
11 Hb_078081_020 0.1672974168 - - -
12 Hb_003398_090 0.1679401092 - - PREDICTED: expansin-A4 [Jatropha curcas]
13 Hb_000163_010 0.1683905635 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
14 Hb_104835_010 0.1702933752 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_060152_010 0.1716410385 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
16 Hb_002042_040 0.1717562353 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
17 Hb_001430_090 0.1721633945 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
18 Hb_003983_010 0.1744372161 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
19 Hb_000117_150 0.1755094971 - - hypothetical protein RCOM_0079810 [Ricinus communis]
20 Hb_002542_050 0.1755913925 - - -

Gene co-expression network

sample Hb_000009_430 Hb_000009_430 Hb_000751_060 Hb_000751_060 Hb_000009_430--Hb_000751_060 Hb_007676_060 Hb_007676_060 Hb_000009_430--Hb_007676_060 Hb_000120_880 Hb_000120_880 Hb_000009_430--Hb_000120_880 Hb_000254_060 Hb_000254_060 Hb_000009_430--Hb_000254_060 Hb_011849_020 Hb_011849_020 Hb_000009_430--Hb_011849_020 Hb_000982_120 Hb_000982_120 Hb_000009_430--Hb_000982_120 Hb_000645_250 Hb_000645_250 Hb_000751_060--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_000751_060--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000751_060--Hb_000751_070 Hb_168319_060 Hb_168319_060 Hb_000751_060--Hb_168319_060 Hb_146930_010 Hb_146930_010 Hb_000751_060--Hb_146930_010 Hb_000847_120 Hb_000847_120 Hb_000751_060--Hb_000847_120 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_170878_060 Hb_170878_060 Hb_007676_060--Hb_170878_060 Hb_007676_060--Hb_146930_010 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_001288_050 Hb_001288_050 Hb_007676_060--Hb_001288_050 Hb_003640_010 Hb_003640_010 Hb_000120_880--Hb_003640_010 Hb_001607_070 Hb_001607_070 Hb_000120_880--Hb_001607_070 Hb_000120_880--Hb_000254_060 Hb_001778_040 Hb_001778_040 Hb_000120_880--Hb_001778_040 Hb_000120_880--Hb_168319_060 Hb_000120_880--Hb_170878_060 Hb_001622_020 Hb_001622_020 Hb_000254_060--Hb_001622_020 Hb_000254_060--Hb_001778_040 Hb_000254_060--Hb_168319_060 Hb_065521_010 Hb_065521_010 Hb_000254_060--Hb_065521_010 Hb_029510_090 Hb_029510_090 Hb_000254_060--Hb_029510_090 Hb_000054_130 Hb_000054_130 Hb_000254_060--Hb_000054_130 Hb_000163_010 Hb_000163_010 Hb_011849_020--Hb_000163_010 Hb_003913_060 Hb_003913_060 Hb_011849_020--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_011849_020--Hb_015978_010 Hb_011849_020--Hb_000254_060 Hb_179138_010 Hb_179138_010 Hb_011849_020--Hb_179138_010 Hb_002566_010 Hb_002566_010 Hb_000982_120--Hb_002566_010 Hb_059780_010 Hb_059780_010 Hb_000982_120--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000982_120--Hb_121441_010 Hb_031931_030 Hb_031931_030 Hb_000982_120--Hb_031931_030 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_145211_010 Hb_145211_010 Hb_000982_120--Hb_145211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0957303 0.0761923 0.948757 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.51241 1.16011

CAGE analysis