Hb_031931_030

Information

Type -
Description -
Location Contig31931: 50299-50616
Sequence    

Annotation

kegg
ID rcu:RCOM_0999070
description lipid binding protein, putative
nr
ID XP_002529688.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q8W453
description Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1
trembl
ID B9SUL9
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0999070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 007_G24.ab1: 50096-50660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031931_030 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_010761_030 0.085704677 - - cytochrome P450, putative [Ricinus communis]
3 Hb_002566_010 0.0910175251 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
4 Hb_029769_010 0.100524232 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
5 Hb_008692_020 0.1077544615 - - -
6 Hb_130563_010 0.1161998794 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
7 Hb_000982_120 0.1227376527 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
8 Hb_002870_010 0.1355447798 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
9 Hb_001218_070 0.1361804799 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
10 Hb_036069_020 0.1372364722 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
11 Hb_059780_010 0.1373340098 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
12 Hb_002900_040 0.1381775043 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
13 Hb_000149_090 0.1385147272 - - -
14 Hb_001136_030 0.1424583757 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
15 Hb_011671_420 0.1438929417 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
16 Hb_033622_020 0.1468521304 - - lipid binding protein, putative [Ricinus communis]
17 Hb_001430_090 0.1478584404 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
18 Hb_001377_010 0.1488261865 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
19 Hb_004223_180 0.1543886851 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
20 Hb_000911_050 0.1548776696 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]

Gene co-expression network

sample Hb_031931_030 Hb_031931_030 Hb_010761_030 Hb_010761_030 Hb_031931_030--Hb_010761_030 Hb_002566_010 Hb_002566_010 Hb_031931_030--Hb_002566_010 Hb_029769_010 Hb_029769_010 Hb_031931_030--Hb_029769_010 Hb_008692_020 Hb_008692_020 Hb_031931_030--Hb_008692_020 Hb_130563_010 Hb_130563_010 Hb_031931_030--Hb_130563_010 Hb_000982_120 Hb_000982_120 Hb_031931_030--Hb_000982_120 Hb_010761_030--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_010761_030--Hb_002870_010 Hb_010761_030--Hb_002566_010 Hb_010761_030--Hb_029769_010 Hb_001136_030 Hb_001136_030 Hb_010761_030--Hb_001136_030 Hb_002566_010--Hb_000982_120 Hb_059780_010 Hb_059780_010 Hb_002566_010--Hb_059780_010 Hb_145211_010 Hb_145211_010 Hb_002566_010--Hb_145211_010 Hb_000149_090 Hb_000149_090 Hb_002566_010--Hb_000149_090 Hb_029769_010--Hb_008692_020 Hb_029769_010--Hb_002566_010 Hb_008768_010 Hb_008768_010 Hb_029769_010--Hb_008768_010 Hb_029769_010--Hb_000149_090 Hb_004712_020 Hb_004712_020 Hb_008692_020--Hb_004712_020 Hb_002122_040 Hb_002122_040 Hb_008692_020--Hb_002122_040 Hb_008692_020--Hb_002870_010 Hb_001105_200 Hb_001105_200 Hb_008692_020--Hb_001105_200 Hb_036069_020 Hb_036069_020 Hb_130563_010--Hb_036069_020 Hb_004223_180 Hb_004223_180 Hb_130563_010--Hb_004223_180 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_000982_120--Hb_059780_010 Hb_121441_010 Hb_121441_010 Hb_000982_120--Hb_121441_010 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_000982_120--Hb_145211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4588 162.107 29.5423 354.42 1.47884 0.748014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.02161 0 1326.88 449.591

CAGE analysis