Hb_008768_010

Information

Type -
Description -
Location Contig8768: 9269-11387
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13010g
description POPTRDRAFT_259649; hypothetical protein
nr
ID XP_012078808.1
description PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
swissprot
ID Q84XI3
description Equilibrative nucleotide transporter 8 OS=Arabidopsis thaliana GN=ETN8 PE=2 SV=1
trembl
ID B9IMY1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s13010g PE=4 SV=2
Gene Ontology
ID GO:0016021
description equilibrative nucleotide transporter 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008768_010 0.0 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
2 Hb_000422_020 0.0997845821 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_000683_010 0.1147950349 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
4 Hb_004881_060 0.1176630954 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
5 Hb_025526_010 0.1270025141 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
6 Hb_000205_210 0.132234741 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
7 Hb_011671_420 0.1323171631 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
8 Hb_056101_010 0.1326829972 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
9 Hb_003900_050 0.1327204016 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
10 Hb_003090_180 0.133676705 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
11 Hb_001104_210 0.13588651 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
12 Hb_029769_010 0.1394443986 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
13 Hb_001136_030 0.1405630298 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
14 Hb_000230_230 0.1406422347 - - hydrolase, putative [Ricinus communis]
15 Hb_012553_020 0.1432042282 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
16 Hb_006788_150 0.1478709398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001900_130 0.1492162603 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
18 Hb_000984_080 0.1511532048 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_027141_010 0.1517815369 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_000300_450 0.1524330201 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_008768_010 Hb_008768_010 Hb_000422_020 Hb_000422_020 Hb_008768_010--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_008768_010--Hb_000683_010 Hb_004881_060 Hb_004881_060 Hb_008768_010--Hb_004881_060 Hb_025526_010 Hb_025526_010 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_011671_420 Hb_011671_420 Hb_008768_010--Hb_011671_420 Hb_000575_110 Hb_000575_110 Hb_000422_020--Hb_000575_110 Hb_000422_020--Hb_000683_010 Hb_003900_050 Hb_003900_050 Hb_000422_020--Hb_003900_050 Hb_056101_010 Hb_056101_010 Hb_000422_020--Hb_056101_010 Hb_000422_020--Hb_025526_010 Hb_011282_070 Hb_011282_070 Hb_000683_010--Hb_011282_070 Hb_020332_040 Hb_020332_040 Hb_000683_010--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_000683_010--Hb_027141_010 Hb_000683_010--Hb_003900_050 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_004881_060--Hb_003900_050 Hb_004881_060--Hb_000205_210 Hb_004881_060--Hb_056101_010 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_025526_010--Hb_056101_010 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_004200_040 Hb_004200_040 Hb_000205_210--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_000205_210--Hb_000140_260 Hb_000205_210--Hb_003900_050 Hb_000205_210--Hb_027141_010 Hb_000205_210--Hb_001105_200 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_001218_070 Hb_001218_070 Hb_011671_420--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_011671_420--Hb_046770_010 Hb_000380_130 Hb_000380_130 Hb_011671_420--Hb_000380_130 Hb_109673_010 Hb_109673_010 Hb_011671_420--Hb_109673_010 Hb_029769_010 Hb_029769_010 Hb_011671_420--Hb_029769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0409688 4.133 1.18578 3.64139 0.078523 0.0359247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0311096 0.367122 0.459891 33.4586 4.96735

CAGE analysis