Hb_006788_150

Information

Type -
Description -
Location Contig6788: 105357-106367
Sequence    

Annotation

kegg
ID rcu:RCOM_0991540
description hypothetical protein
nr
ID XP_002520971.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFY6
description Protein ELC-like OS=Arabidopsis thaliana GN=ELCL PE=1 SV=1
trembl
ID B9S4R4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0991540 PE=4 SV=1
Gene Ontology
ID GO:0006464
description protein elc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_025526_010 0.0836950897 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
3 Hb_005116_010 0.1133783531 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
4 Hb_000661_230 0.1149306 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
5 Hb_000412_060 0.1172573684 - - hypothetical protein JCGZ_18814 [Jatropha curcas]
6 Hb_007894_260 0.1201437898 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_005010_040 0.1234803608 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
8 Hb_006538_010 0.1247361826 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_001014_150 0.1273625678 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000010_200 0.1290925653 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_003060_080 0.1296286225 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
12 Hb_009627_040 0.1309069465 - - Lipase class 3-related protein, putative [Theobroma cacao]
13 Hb_000230_230 0.1318478942 - - hydrolase, putative [Ricinus communis]
14 Hb_003090_180 0.1321231317 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
15 Hb_056101_010 0.1343889427 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
16 Hb_002200_060 0.1385797892 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
17 Hb_000422_020 0.1387472472 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_001104_210 0.1404670212 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
19 Hb_006970_100 0.1411764752 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_001136_030 0.1417666606 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]

Gene co-expression network

sample Hb_006788_150 Hb_006788_150 Hb_025526_010 Hb_025526_010 Hb_006788_150--Hb_025526_010 Hb_005116_010 Hb_005116_010 Hb_006788_150--Hb_005116_010 Hb_000661_230 Hb_000661_230 Hb_006788_150--Hb_000661_230 Hb_000412_060 Hb_000412_060 Hb_006788_150--Hb_000412_060 Hb_007894_260 Hb_007894_260 Hb_006788_150--Hb_007894_260 Hb_005010_040 Hb_005010_040 Hb_006788_150--Hb_005010_040 Hb_056101_010 Hb_056101_010 Hb_025526_010--Hb_056101_010 Hb_025526_010--Hb_000661_230 Hb_000422_020 Hb_000422_020 Hb_025526_010--Hb_000422_020 Hb_004881_060 Hb_004881_060 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_000661_230--Hb_003060_080 Hb_003085_080 Hb_003085_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_018591_050 Hb_018591_050 Hb_000412_060--Hb_018591_050 Hb_000412_060--Hb_025526_010 Hb_000412_060--Hb_007894_260 Hb_000412_060--Hb_005116_010 Hb_000077_330 Hb_000077_330 Hb_000412_060--Hb_000077_330 Hb_006569_110 Hb_006569_110 Hb_007894_260--Hb_006569_110 Hb_006938_010 Hb_006938_010 Hb_007894_260--Hb_006938_010 Hb_007894_260--Hb_003060_080 Hb_000010_200 Hb_000010_200 Hb_007894_260--Hb_000010_200 Hb_000381_030 Hb_000381_030 Hb_007894_260--Hb_000381_030 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_005010_040--Hb_010334_040 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0218312 1.80042 0.865942 0.979952 0.020462 0.129781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0393184 0.0724226 7.39794 1.60997

CAGE analysis