Hb_000010_200

Information

Type -
Description -
Location Contig10: 234395-236293
Sequence    

Annotation

kegg
ID rcu:RCOM_1507900
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.17)
nr
ID XP_002511283.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9SKB2
description Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1
trembl
ID B9RAQ8
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_1507900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like serine threonine tyrosine-protein kinase sobir1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00155: 235339-236083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_200 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_002686_390 0.0862948926 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
3 Hb_000381_030 0.0934376502 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
4 Hb_001331_040 0.0937723134 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
5 Hb_004884_200 0.0944915967 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
6 Hb_006949_030 0.0983303798 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_007894_260 0.1021188456 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_006711_020 0.1024762298 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
9 Hb_009785_010 0.1038125962 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
10 Hb_006938_010 0.1075513082 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
11 Hb_005010_040 0.1097365506 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
12 Hb_002391_350 0.1140225253 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
13 Hb_009627_040 0.1148858309 - - Lipase class 3-related protein, putative [Theobroma cacao]
14 Hb_004574_010 0.1151214689 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
15 Hb_001514_210 0.1161615235 - - hypothetical protein VITISV_012133 [Vitis vinifera]
16 Hb_005237_040 0.1199107077 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
17 Hb_000254_040 0.1216234464 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
18 Hb_002542_090 0.1230419854 - - Potassium transporter, putative [Ricinus communis]
19 Hb_014037_010 0.1239962517 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
20 Hb_006788_150 0.1290925653 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000010_200 Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_000010_200--Hb_002686_390 Hb_000381_030 Hb_000381_030 Hb_000010_200--Hb_000381_030 Hb_001331_040 Hb_001331_040 Hb_000010_200--Hb_001331_040 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_006949_030 Hb_006949_030 Hb_000010_200--Hb_006949_030 Hb_007894_260 Hb_007894_260 Hb_000010_200--Hb_007894_260 Hb_000254_040 Hb_000254_040 Hb_002686_390--Hb_000254_040 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_002686_390--Hb_006949_030 Hb_002686_390--Hb_004884_200 Hb_001514_210 Hb_001514_210 Hb_002686_390--Hb_001514_210 Hb_000381_030--Hb_001331_040 Hb_000381_030--Hb_006949_030 Hb_006938_010 Hb_006938_010 Hb_000381_030--Hb_006938_010 Hb_001013_040 Hb_001013_040 Hb_000381_030--Hb_001013_040 Hb_000381_030--Hb_007894_260 Hb_001331_040--Hb_006949_030 Hb_001331_040--Hb_006938_010 Hb_001331_040--Hb_001013_040 Hb_005010_040 Hb_005010_040 Hb_001331_040--Hb_005010_040 Hb_009785_010 Hb_009785_010 Hb_004884_200--Hb_009785_010 Hb_002391_350 Hb_002391_350 Hb_004884_200--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_004884_200--Hb_005237_040 Hb_014037_010 Hb_014037_010 Hb_004884_200--Hb_014037_010 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_006949_030--Hb_006938_010 Hb_001621_020 Hb_001621_020 Hb_006949_030--Hb_001621_020 Hb_006569_110 Hb_006569_110 Hb_007894_260--Hb_006569_110 Hb_007894_260--Hb_006938_010 Hb_003060_080 Hb_003060_080 Hb_007894_260--Hb_003060_080 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.07867 5.90097 2.14099 1.74383 0.051284 0.0184111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239077 0.0188109 0.1781 14.5859 2.02428

CAGE analysis