Hb_002391_350

Information

Type -
Description -
Location Contig2391: 216161-217740
Sequence    

Annotation

kegg
ID egr:104419616
description uncharacterized LOC104419616
nr
ID XP_012088456.1
description PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25339 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25073: 216242-217624
cDNA
(Sanger)
(ID:Location)		 043_K21.ab1: 216242-217601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_350 0.0 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
2 Hb_004884_200 0.0672611605 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
3 Hb_003807_020 0.0841016636 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
4 Hb_009627_040 0.0846046124 - - Lipase class 3-related protein, putative [Theobroma cacao]
5 Hb_005237_040 0.0850955124 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
6 Hb_000335_050 0.0853414041 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_006711_020 0.0862152658 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
8 Hb_005211_090 0.088149909 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
9 Hb_002150_010 0.0913871994 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
10 Hb_009785_010 0.0947356393 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
11 Hb_000934_290 0.097254191 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000852_050 0.0978062566 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
13 Hb_000236_050 0.1040234331 - - phosphate transporter [Manihot esculenta]
14 Hb_014037_010 0.1067946587 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
15 Hb_006949_030 0.1093196818 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_000010_200 0.1140225253 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_012753_200 0.1169208016 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
18 Hb_004447_020 0.1180019311 - - carbohydrate binding protein, putative [Ricinus communis]
19 Hb_000381_030 0.1184726368 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
20 Hb_088916_010 0.1202294192 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_350 Hb_002391_350 Hb_004884_200 Hb_004884_200 Hb_002391_350--Hb_004884_200 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_009627_040 Hb_009627_040 Hb_002391_350--Hb_009627_040 Hb_005237_040 Hb_005237_040 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_006711_020 Hb_006711_020 Hb_002391_350--Hb_006711_020 Hb_009785_010 Hb_009785_010 Hb_004884_200--Hb_009785_010 Hb_004884_200--Hb_005237_040 Hb_014037_010 Hb_014037_010 Hb_004884_200--Hb_014037_010 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_009581_050 Hb_009581_050 Hb_003807_020--Hb_009581_050 Hb_005211_090 Hb_005211_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_009627_040--Hb_005116_010 Hb_005010_040 Hb_005010_040 Hb_009627_040--Hb_005010_040 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_014037_010 Hb_000236_050 Hb_000236_050 Hb_005237_040--Hb_000236_050 Hb_005237_040--Hb_006711_020 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_009581_050 Hb_000335_050--Hb_000579_180 Hb_000335_050--Hb_004447_020 Hb_010519_020 Hb_010519_020 Hb_006711_020--Hb_010519_020 Hb_006711_020--Hb_009785_010 Hb_002686_390 Hb_002686_390 Hb_006711_020--Hb_002686_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 45.6433 12.8167 23.2663 0.0423621 0.0624876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149974 0 0 98.2598 13.2822

CAGE analysis