Hb_004884_200

Information

Type -
Description -
Location Contig4884: 149175-151879
Sequence    

Annotation

kegg
ID rcu:RCOM_0847660
description ferritin, plant, putative (EC:1.16.3.1)
nr
ID XP_012089784.1
description PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
swissprot
ID Q8H1T3
description Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1
trembl
ID B9SKZ9
description Ferritin OS=Ricinus communis GN=RCOM_0847660 PE=3 SV=1
Gene Ontology
ID GO:0005623
description ferritin precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45156: 149201-151844 , PASA_asmbl_45158: 150994-151334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_200 0.0 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
2 Hb_009785_010 0.0612844097 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
3 Hb_002391_350 0.0672611605 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
4 Hb_005237_040 0.0712285464 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
5 Hb_014037_010 0.0831200568 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
6 Hb_009627_040 0.0844813031 - - Lipase class 3-related protein, putative [Theobroma cacao]
7 Hb_006711_020 0.0925884221 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
8 Hb_000010_200 0.0944915967 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000236_050 0.098559155 - - phosphate transporter [Manihot esculenta]
10 Hb_002686_390 0.1002895306 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_006949_030 0.1032973631 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_005211_090 0.1073641178 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
13 Hb_006938_010 0.109119895 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_001331_040 0.114008441 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
15 Hb_000381_030 0.1141229356 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
16 Hb_003807_020 0.1173249562 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
17 Hb_000011_120 0.1177633175 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
18 Hb_007894_260 0.1179539647 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_182021_010 0.1214179595 - - sucrose transporter 4 [Hevea brasiliensis]
20 Hb_000335_050 0.1238374812 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004884_200 Hb_004884_200 Hb_009785_010 Hb_009785_010 Hb_004884_200--Hb_009785_010 Hb_002391_350 Hb_002391_350 Hb_004884_200--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_004884_200--Hb_005237_040 Hb_014037_010 Hb_014037_010 Hb_004884_200--Hb_014037_010 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_006711_020 Hb_006711_020 Hb_004884_200--Hb_006711_020 Hb_009785_010--Hb_005237_040 Hb_009785_010--Hb_014037_010 Hb_009785_010--Hb_006711_020 Hb_000236_050 Hb_000236_050 Hb_009785_010--Hb_000236_050 Hb_009785_010--Hb_002391_350 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_009627_040 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_002391_350--Hb_006711_020 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_000236_050 Hb_005237_040--Hb_006711_020 Hb_014037_010--Hb_000236_050 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_009627_040--Hb_005116_010 Hb_005010_040 Hb_005010_040 Hb_009627_040--Hb_005010_040 Hb_010519_020 Hb_010519_020 Hb_006711_020--Hb_010519_020 Hb_002686_390 Hb_002686_390 Hb_006711_020--Hb_002686_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0373253 27.9839 8.66486 11.2116 0.08625 0.045734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.478725 0.242106 0 59.2639 10.7681

CAGE analysis