Hb_009627_040

Information

Type -
Description -
Location Contig9627: 41227-42447
Sequence    

Annotation

kegg
ID tcc:TCM_015403
description Lipase class 3-related protein, putative
nr
ID XP_007039034.1
description Lipase class 3-related protein, putative [Theobroma cacao]
swissprot
ID Q680C0
description GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1
trembl
ID A0A061G105
description Lipase class 3-related protein, putative OS=Theobroma cacao GN=TCM_015403 PE=4 SV=1
Gene Ontology
ID GO:0006629
description gdsl esterase lipase at4g10955

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009627_040 0.0 - - Lipase class 3-related protein, putative [Theobroma cacao]
2 Hb_005211_090 0.063588944 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
3 Hb_000011_120 0.0734351414 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
4 Hb_005116_010 0.0827621554 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
5 Hb_004884_200 0.0844813031 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
6 Hb_002391_350 0.0846046124 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
7 Hb_005010_040 0.0986574074 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
8 Hb_006711_020 0.1012398735 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
9 Hb_005237_040 0.1023709305 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
10 Hb_009785_010 0.1029890255 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
11 Hb_006949_030 0.1030084412 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_010839_010 0.1043197299 - - receptor-kinase, putative [Ricinus communis]
13 Hb_006938_010 0.1095780821 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_010519_020 0.1101677986 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
15 Hb_001318_120 0.1110136483 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
16 Hb_014037_010 0.1116671061 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
17 Hb_001660_040 0.1131838798 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
18 Hb_000010_200 0.1148858309 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_001329_110 0.1175281469 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
20 Hb_001331_040 0.1201032229 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009627_040 Hb_009627_040 Hb_005211_090 Hb_005211_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_009627_040--Hb_005116_010 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_002391_350 Hb_002391_350 Hb_009627_040--Hb_002391_350 Hb_005010_040 Hb_005010_040 Hb_009627_040--Hb_005010_040 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_005211_090--Hb_000011_120 Hb_005211_090--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_005211_090--Hb_005237_040 Hb_001329_110 Hb_001329_110 Hb_005211_090--Hb_001329_110 Hb_000011_120--Hb_001329_110 Hb_175758_010 Hb_175758_010 Hb_000011_120--Hb_175758_010 Hb_010839_010 Hb_010839_010 Hb_000011_120--Hb_010839_010 Hb_001318_120 Hb_001318_120 Hb_000011_120--Hb_001318_120 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005116_010--Hb_005010_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_005116_010--Hb_010839_010 Hb_005116_010--Hb_005211_090 Hb_009785_010 Hb_009785_010 Hb_004884_200--Hb_009785_010 Hb_004884_200--Hb_002391_350 Hb_004884_200--Hb_005237_040 Hb_014037_010 Hb_014037_010 Hb_004884_200--Hb_014037_010 Hb_006711_020 Hb_006711_020 Hb_004884_200--Hb_006711_020 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_005237_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_002391_350--Hb_006711_020 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_005010_040--Hb_010334_040 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.273161 0.128353 0.153583 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.774216 0.155072

CAGE analysis