Hb_001318_120

Information

Type -
Description -
Location Contig1318: 113438-115947
Sequence    

Annotation

kegg
ID rcu:RCOM_1344360
description hypothetical protein
nr
ID XP_012082968.1
description PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14086 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09214: 113298-113865 , PASA_asmbl_09215: 114236-115618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_120 0.0 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
2 Hb_010519_020 0.0597183409 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
3 Hb_011472_020 0.0728673858 - - PREDICTED: mucin-17-like [Jatropha curcas]
4 Hb_175758_010 0.0757748559 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
5 Hb_005276_220 0.0807562119 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
6 Hb_001329_110 0.0813313701 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
7 Hb_000403_110 0.0836090569 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
8 Hb_005542_040 0.085151068 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
9 Hb_000011_120 0.0882029029 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
10 Hb_001421_010 0.0943089226 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
11 Hb_039022_020 0.0957015892 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
12 Hb_008783_020 0.1016270923 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
13 Hb_000840_050 0.1080833037 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
14 Hb_009627_040 0.1110136483 - - Lipase class 3-related protein, putative [Theobroma cacao]
15 Hb_166009_010 0.1152792816 - - carbonyl reductase, putative [Ricinus communis]
16 Hb_000203_080 0.1160755837 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
17 Hb_006711_020 0.1180031303 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
18 Hb_003842_010 0.1185876945 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_010839_010 0.1187867901 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000009_130 0.118837204 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]

Gene co-expression network

sample Hb_001318_120 Hb_001318_120 Hb_010519_020 Hb_010519_020 Hb_001318_120--Hb_010519_020 Hb_011472_020 Hb_011472_020 Hb_001318_120--Hb_011472_020 Hb_175758_010 Hb_175758_010 Hb_001318_120--Hb_175758_010 Hb_005276_220 Hb_005276_220 Hb_001318_120--Hb_005276_220 Hb_001329_110 Hb_001329_110 Hb_001318_120--Hb_001329_110 Hb_000403_110 Hb_000403_110 Hb_001318_120--Hb_000403_110 Hb_010519_020--Hb_175758_010 Hb_001421_010 Hb_001421_010 Hb_010519_020--Hb_001421_010 Hb_010519_020--Hb_011472_020 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020 Hb_010519_020--Hb_000403_110 Hb_011472_020--Hb_005276_220 Hb_011472_020--Hb_001421_010 Hb_011472_020--Hb_000403_110 Hb_039022_020 Hb_039022_020 Hb_011472_020--Hb_039022_020 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_001329_110 Hb_000011_120 Hb_000011_120 Hb_175758_010--Hb_000011_120 Hb_000840_050 Hb_000840_050 Hb_175758_010--Hb_000840_050 Hb_005276_220--Hb_000403_110 Hb_005542_040 Hb_005542_040 Hb_005276_220--Hb_005542_040 Hb_005276_220--Hb_175758_010 Hb_005276_220--Hb_010519_020 Hb_001329_110--Hb_000011_120 Hb_001329_110--Hb_000840_050 Hb_001329_110--Hb_010519_020 Hb_001329_110--Hb_001421_010 Hb_008783_020 Hb_008783_020 Hb_000403_110--Hb_008783_020 Hb_000403_110--Hb_001421_010 Hb_000403_110--Hb_175758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.10053 5.24115 4.28393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.075 3.38268

CAGE analysis