Hb_000840_050

Information

Type desease resistance
Description Gene Name: TIR
Location Contig840: 23597-28222
Sequence    

Annotation

kegg
ID pmum:103336185
description TMV resistance protein N-like
nr
ID XP_010661243.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID A5C792
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018104 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60071: 23875-24070 , PASA_asmbl_60074: 26695-27907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_050 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
2 Hb_138606_020 0.0731322663 - - Nitrate transporter2.5 [Theobroma cacao]
3 Hb_175758_010 0.08084866 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
4 Hb_000203_080 0.081429256 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
5 Hb_001329_110 0.0857518778 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
6 Hb_009659_040 0.0944048937 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
7 Hb_010417_100 0.0953196019 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
8 Hb_029260_010 0.0957687969 - - nitrate transporter, putative [Ricinus communis]
9 Hb_004122_060 0.0959251552 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
10 Hb_039022_020 0.0963756962 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
11 Hb_001421_010 0.0985576445 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
12 Hb_006788_100 0.101072042 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
13 Hb_005357_020 0.1034811685 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001318_120 0.1080833037 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
15 Hb_005276_220 0.1110227077 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_000096_210 0.1119745147 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
17 Hb_000011_120 0.1169832759 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
18 Hb_000403_110 0.1179820436 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
19 Hb_011472_020 0.1180733062 - - PREDICTED: mucin-17-like [Jatropha curcas]
20 Hb_166009_010 0.118435211 - - carbonyl reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000840_050 Hb_000840_050 Hb_138606_020 Hb_138606_020 Hb_000840_050--Hb_138606_020 Hb_175758_010 Hb_175758_010 Hb_000840_050--Hb_175758_010 Hb_000203_080 Hb_000203_080 Hb_000840_050--Hb_000203_080 Hb_001329_110 Hb_001329_110 Hb_000840_050--Hb_001329_110 Hb_009659_040 Hb_009659_040 Hb_000840_050--Hb_009659_040 Hb_010417_100 Hb_010417_100 Hb_000840_050--Hb_010417_100 Hb_029260_010 Hb_029260_010 Hb_138606_020--Hb_029260_010 Hb_138606_020--Hb_009659_040 Hb_005357_020 Hb_005357_020 Hb_138606_020--Hb_005357_020 Hb_000347_420 Hb_000347_420 Hb_138606_020--Hb_000347_420 Hb_012743_020 Hb_012743_020 Hb_138606_020--Hb_012743_020 Hb_001421_010 Hb_001421_010 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_001329_110 Hb_010519_020 Hb_010519_020 Hb_175758_010--Hb_010519_020 Hb_000011_120 Hb_000011_120 Hb_175758_010--Hb_000011_120 Hb_001318_120 Hb_001318_120 Hb_175758_010--Hb_001318_120 Hb_001114_120 Hb_001114_120 Hb_000203_080--Hb_001114_120 Hb_003842_010 Hb_003842_010 Hb_000203_080--Hb_003842_010 Hb_000203_080--Hb_001329_110 Hb_002622_010 Hb_002622_010 Hb_000203_080--Hb_002622_010 Hb_000203_080--Hb_175758_010 Hb_001329_110--Hb_000011_120 Hb_001329_110--Hb_001318_120 Hb_001329_110--Hb_010519_020 Hb_001329_110--Hb_001421_010 Hb_000917_120 Hb_000917_120 Hb_009659_040--Hb_000917_120 Hb_001660_050 Hb_001660_050 Hb_009659_040--Hb_001660_050 Hb_170878_050 Hb_170878_050 Hb_009659_040--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_009659_040--Hb_029866_110 Hb_010417_100--Hb_005357_020 Hb_007894_030 Hb_007894_030 Hb_010417_100--Hb_007894_030 Hb_001636_010 Hb_001636_010 Hb_010417_100--Hb_001636_010 Hb_000085_220 Hb_000085_220 Hb_010417_100--Hb_000085_220 Hb_000497_100 Hb_000497_100 Hb_010417_100--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206482 0.143837 0.194201 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.334418 0.143966

CAGE analysis