Hb_000347_420

Information

Type -
Description -
Location Contig347: 424879-425247
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06410g
description hypothetical protein
nr
ID KDP40697.1
description hypothetical protein JCGZ_24696 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24696 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_420 0.0 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
2 Hb_007943_020 0.0914902985 - - transcription factor, putative [Ricinus communis]
3 Hb_029260_010 0.0936059699 - - nitrate transporter, putative [Ricinus communis]
4 Hb_004307_070 0.1001514028 - - kinase, putative [Ricinus communis]
5 Hb_138606_020 0.1020659752 - - Nitrate transporter2.5 [Theobroma cacao]
6 Hb_000095_070 0.107990956 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000994_100 0.1081337041 - - RALFL33, putative [Ricinus communis]
8 Hb_001143_140 0.1105077624 - - Aldehyde dehydrogenase, putative [Ricinus communis]
9 Hb_012743_020 0.1175519111 - - serine/threonine protein phosphatase, putative [Ricinus communis]
10 Hb_002814_050 0.119065037 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
11 Hb_000589_240 0.1239355257 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_003226_030 0.1250998575 - - sucrose synthase 5 [Hevea brasiliensis]
13 Hb_000597_080 0.1275587999 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
14 Hb_005357_020 0.1294123446 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002042_160 0.1297323876 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_000155_040 0.1323240675 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
17 Hb_001607_070 0.139892549 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
18 Hb_002490_090 0.1419587108 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
19 Hb_008111_010 0.1432518927 - - hypothetical protein VITISV_021527 [Vitis vinifera]
20 Hb_000028_460 0.1436337441 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000347_420 Hb_000347_420 Hb_007943_020 Hb_007943_020 Hb_000347_420--Hb_007943_020 Hb_029260_010 Hb_029260_010 Hb_000347_420--Hb_029260_010 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_138606_020 Hb_138606_020 Hb_000347_420--Hb_138606_020 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_003226_030 Hb_003226_030 Hb_007943_020--Hb_003226_030 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_007943_020--Hb_138606_020 Hb_029260_010--Hb_138606_020 Hb_005357_020 Hb_005357_020 Hb_029260_010--Hb_005357_020 Hb_012743_020 Hb_012743_020 Hb_029260_010--Hb_012743_020 Hb_000840_050 Hb_000840_050 Hb_029260_010--Hb_000840_050 Hb_001143_140 Hb_001143_140 Hb_004307_070--Hb_001143_140 Hb_006355_070 Hb_006355_070 Hb_004307_070--Hb_006355_070 Hb_004307_070--Hb_000095_070 Hb_009641_040 Hb_009641_040 Hb_004307_070--Hb_009641_040 Hb_004307_070--Hb_000994_100 Hb_138606_020--Hb_000840_050 Hb_009659_040 Hb_009659_040 Hb_138606_020--Hb_009659_040 Hb_138606_020--Hb_005357_020 Hb_138606_020--Hb_012743_020 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_001728_130 Hb_001728_130 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_002970_070 Hb_002970_070 Hb_000994_100--Hb_002970_070 Hb_000994_100--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_000994_100--Hb_055529_010 Hb_000994_100--Hb_029260_010 Hb_010417_090 Hb_010417_090 Hb_000994_100--Hb_010417_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.06732 2.44586 11.0409 0.0997192 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.28623 12.3515 8.46642

CAGE analysis