Hb_003226_030

Information

Type -
Description -
Location Contig3226: 24943-31307
Sequence    

Annotation

kegg
ID tcc:TCM_004698
description Sucrose synthase 3 isoform 1
nr
ID AGM14950.1
description sucrose synthase 5 [Hevea brasiliensis]
swissprot
ID O24301
description Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1
trembl
ID A0A023HK96
description Sucrose synthase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34153: 24952-31367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_030 0.0 - - sucrose synthase 5 [Hevea brasiliensis]
2 Hb_012743_020 0.0752246223 - - serine/threonine protein phosphatase, putative [Ricinus communis]
3 Hb_002000_130 0.0844921461 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
4 Hb_007943_020 0.0935171543 - - transcription factor, putative [Ricinus communis]
5 Hb_001143_140 0.10010167 - - Aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_005357_020 0.1002942017 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008092_020 0.1014203879 - - transcription factor, putative [Ricinus communis]
8 Hb_000028_460 0.1066455656 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
9 Hb_000589_240 0.109409293 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000614_190 0.1184436894 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
11 Hb_000095_070 0.1192552491 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029260_010 0.119304065 - - nitrate transporter, putative [Ricinus communis]
13 Hb_038777_010 0.1209236726 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
14 Hb_000483_130 0.1212297772 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
15 Hb_002671_060 0.1223375823 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
16 Hb_000020_030 0.1243578744 - - protein binding protein, putative [Ricinus communis]
17 Hb_000347_420 0.1250998575 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
18 Hb_138606_020 0.1280483162 - - Nitrate transporter2.5 [Theobroma cacao]
19 Hb_003835_030 0.12825541 - - glycosyltransferase, partial [Arabidopsis thaliana]
20 Hb_002010_070 0.1311289843 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_003226_030 Hb_003226_030 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_007943_020 Hb_007943_020 Hb_003226_030--Hb_007943_020 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_012743_020--Hb_005357_020 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_012743_020--Hb_002000_130 Hb_002000_130--Hb_008092_020 Hb_000028_460 Hb_000028_460 Hb_002000_130--Hb_000028_460 Hb_003835_030 Hb_003835_030 Hb_002000_130--Hb_003835_030 Hb_002000_130--Hb_001143_140 Hb_000614_190 Hb_000614_190 Hb_002000_130--Hb_000614_190 Hb_000347_420 Hb_000347_420 Hb_007943_020--Hb_000347_420 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_138606_020 Hb_138606_020 Hb_007943_020--Hb_138606_020 Hb_004307_070 Hb_004307_070 Hb_001143_140--Hb_004307_070 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_001143_140--Hb_000614_190 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_005357_020--Hb_000589_240 Hb_005357_020--Hb_138606_020 Hb_005357_020--Hb_029260_010 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_008092_020--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.357155 46.8862 16.2707 50.4043 0.535366 2.11059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.338414 0.507238 0.169507 44.4334 33.7826

CAGE analysis