Hb_000589_240

Information

Type -
Description -
Location Contig589: 242543-243859
Sequence    

Annotation

kegg
ID rcu:RCOM_0040620
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002531578.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9LZL3
description Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1
trembl
ID B9T009
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_0040620 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase pcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50098: 243576-243696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_240 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_012743_020 0.0829637481 - - serine/threonine protein phosphatase, putative [Ricinus communis]
3 Hb_005357_020 0.0844529095 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004306_140 0.0993174835 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_001143_140 0.1041438861 - - Aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_000028_460 0.1043645657 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
7 Hb_000472_020 0.1063296468 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_174101_010 0.1063480886 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
9 Hb_001544_070 0.1064817848 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
10 Hb_003226_030 0.109409293 - - sucrose synthase 5 [Hevea brasiliensis]
11 Hb_008092_020 0.111787886 - - transcription factor, putative [Ricinus communis]
12 Hb_000614_190 0.1130055856 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
13 Hb_007420_020 0.1162783532 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_138606_020 0.1169256323 - - Nitrate transporter2.5 [Theobroma cacao]
15 Hb_029260_010 0.1185759623 - - nitrate transporter, putative [Ricinus communis]
16 Hb_007894_030 0.1188571455 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_000398_140 0.1193194526 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
18 Hb_002000_130 0.1197680987 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
19 Hb_004421_010 0.121021666 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_001174_030 0.1225979294 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000589_240 Hb_000589_240 Hb_012743_020 Hb_012743_020 Hb_000589_240--Hb_012743_020 Hb_005357_020 Hb_005357_020 Hb_000589_240--Hb_005357_020 Hb_004306_140 Hb_004306_140 Hb_000589_240--Hb_004306_140 Hb_001143_140 Hb_001143_140 Hb_000589_240--Hb_001143_140 Hb_000028_460 Hb_000028_460 Hb_000589_240--Hb_000028_460 Hb_000472_020 Hb_000472_020 Hb_000589_240--Hb_000472_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_138606_020 Hb_138606_020 Hb_005357_020--Hb_138606_020 Hb_005357_020--Hb_029260_010 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_007894_030 Hb_007894_030 Hb_004306_140--Hb_007894_030 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_004307_070 Hb_004307_070 Hb_001143_140--Hb_004307_070 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_001143_140--Hb_002000_130 Hb_001143_140--Hb_003226_030 Hb_001143_140--Hb_000614_190 Hb_000497_100 Hb_000497_100 Hb_000028_460--Hb_000497_100 Hb_008092_020 Hb_008092_020 Hb_000028_460--Hb_008092_020 Hb_000028_460--Hb_038777_010 Hb_000028_460--Hb_005357_020 Hb_000028_460--Hb_002000_130 Hb_000028_460--Hb_012743_020 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.38074 1.08298 2.18141 0.0319245 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.036332 0 0.0534076 2.02324 1.60489

CAGE analysis