Hb_038777_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig38777: 12659-17689
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02010g
description myb family transcription factor family protein
nr
ID XP_011018494.1
description PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
swissprot
ID Q9C616
description Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1
trembl
ID U5GMY7
description Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0001s02010g PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcription factor kan2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038777_010 0.0 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
2 Hb_020285_010 0.080930023 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
3 Hb_005357_020 0.0827622458 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000497_100 0.0857110088 - - respiratory burst oxidase D [Manihot esculenta]
5 Hb_001862_060 0.0867181944 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
6 Hb_007894_030 0.0886567617 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_000028_460 0.0907469404 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
8 Hb_001369_070 0.0912449224 - - unnamed protein product [Vitis vinifera]
9 Hb_074312_020 0.0918585627 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002276_100 0.0924852057 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
11 Hb_046101_010 0.0926388688 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
12 Hb_008226_120 0.0958425991 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001636_010 0.1012741726 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
14 Hb_006316_030 0.1030450053 - - aldehyde oxidase, putative [Ricinus communis]
15 Hb_001894_040 0.1049827418 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
16 Hb_010417_100 0.1054473043 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
17 Hb_002600_010 0.1195959163 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_004544_090 0.1206990676 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003226_030 0.1209236726 - - sucrose synthase 5 [Hevea brasiliensis]
20 Hb_009581_040 0.1218282252 - - hypothetical protein B456_011G052100 [Gossypium raimondii]

Gene co-expression network

sample Hb_038777_010 Hb_038777_010 Hb_020285_010 Hb_020285_010 Hb_038777_010--Hb_020285_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_000497_100 Hb_000497_100 Hb_038777_010--Hb_000497_100 Hb_001862_060 Hb_001862_060 Hb_038777_010--Hb_001862_060 Hb_007894_030 Hb_007894_030 Hb_038777_010--Hb_007894_030 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_020285_010--Hb_000497_100 Hb_046101_010 Hb_046101_010 Hb_020285_010--Hb_046101_010 Hb_001369_070 Hb_001369_070 Hb_020285_010--Hb_001369_070 Hb_020285_010--Hb_007894_030 Hb_002276_100 Hb_002276_100 Hb_020285_010--Hb_002276_100 Hb_012743_020 Hb_012743_020 Hb_005357_020--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_138606_020 Hb_138606_020 Hb_005357_020--Hb_138606_020 Hb_029260_010 Hb_029260_010 Hb_005357_020--Hb_029260_010 Hb_000497_100--Hb_001369_070 Hb_000497_100--Hb_000028_460 Hb_000497_100--Hb_007894_030 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_074312_020 Hb_074312_020 Hb_001862_060--Hb_074312_020 Hb_003439_020 Hb_003439_020 Hb_001862_060--Hb_003439_020 Hb_134017_010 Hb_134017_010 Hb_001862_060--Hb_134017_010 Hb_009581_040 Hb_009581_040 Hb_001862_060--Hb_009581_040 Hb_001894_040 Hb_001894_040 Hb_001862_060--Hb_001894_040 Hb_007894_030--Hb_001369_070 Hb_007894_030--Hb_010417_100 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_008092_020 Hb_008092_020 Hb_000028_460--Hb_008092_020 Hb_000028_460--Hb_005357_020 Hb_002000_130 Hb_002000_130 Hb_000028_460--Hb_002000_130 Hb_000028_460--Hb_012743_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0227741 6.88354 1.88799 4.09982 0.0393942 0.0934949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0231066 0.0545425 0 6.0192 2.61109

CAGE analysis